Lelliottia jeotgali: LJPFL01_3793
Help
Entry
LJPFL01_3793 CDS
T05035
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
lef
Lelliottia jeotgali
Brite
KEGG Orthology (KO) [BR:
lef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lef03019
]
LJPFL01_3793
Messenger RNA biogenesis [BR:
lef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LJPFL01_3793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
ASV57156
LinkDB
All DBs
Position
complement(4063249..4065189)
Genome browser
AA seq
646 aa
AA seq
DB search
MRLTTKFSAFITLLTGLTIFVTLMGCSLSFYIAIQDKLGNRLQSVASVIDSRLVTSTLPA
LSQQLDELMVPVDIVHIDILQGSKVVLSHARQGSYRPAGTLAQYREMTVHSLKSPGMTIR
LVYQDPMANYFRSLMTTAPLTVAVGFIVVLIFLAVRWLRRQLSGQELLESRSVRILNGER
GAKVRGSVYEWPSRTSSALDVLLSEIQFASDQRSRMDTLIRSYAAQDNKTGLNNRLFFDN
QLATLLDDTEKVGAHGVVMIIRLPDFDLLRDTWGRTVAEDHLFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEAESIASQLLKAVDALPPTKMLDRDDMVHIGICAWRGGQHT
LQVMEHAEAATRNAVLQGANGWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
MRNGQVHHRELLCRIFDGTEEVVSAEYLPMVLQFGLSEEYDRQQITRLIPFLSFWPEENL
ALQITVESLIRPRFQRWLRDVLMQCEKSQRKRIIFELAEADVCQHISRLQPVVRLMNALG
ARVAVTQVGLTLVSTSWIKELDVELLKLHPGLVRNIEKRTENQLLVQSLVEACKGTQTQV
FATGIRSRSEWQMLTERGVAGGQGDFIASSQPLDSNVKKYLQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcagcttttattacgctgctgacggggctgactatcttc
gtcaccctgatggggtgctcgctgagcttttatattgcgattcaggacaagctgggcaac
cgtttacagtccgtagcatcagtcattgattcgcgtcttgtgacctcgactttacctgcg
ctctcacagcaactggatgaactgatggtgccggtggatattgtgcacatcgacatcctt
cagggtagcaaagttgttctgagccatgcgcgtcaaggcagttatcgtccggcggggact
ctggcgcagtatcgcgaaatgacggtccattcattaaaaagccctgggatgactattagg
ctggtctatcaggatccgatggcgaactatttccgctcgctgatgacgaccgcaccgctg
accgtcgccgtgggctttattgtggtgctgatttttttggcagtgcgctggctgcggcgt
caactctccgggcaagaactgctggaatcgcggtcggtgcgcatcttaaacggcgaacgg
ggcgcgaaggtgcgtggttcggtctacgaatggccttctcgaaccagcagtgcgctggat
gttctgctctcggaaattcagtttgccagcgatcagcgtagtcggatggatacgctcatt
cggtcatacgccgctcaggacaacaaaaccggcctgaacaatcgtcttttctttgataat
caactggcgacgctgttggacgacactgagaaagtgggtgcgcatggcgtcgtgatgatc
attcgtctacctgattttgatttattgcgcgatacctggggccgaacggtggctgaagac
catctctttacgctcattaatcttttatcgacctttattatgcgttatcccggagcgcta
ctggcacgctatcatcgtagcgattttgctgtgctactcccgcaccgcacgttgaaagag
gccgaaagtattgccagccagttgcttaaagcggtcgatgccctgccgccaaccaaaatg
ctcgatcgtgatgatatggttcatatcggcatttgcgcctggcgcggtgggcaacacact
cttcaggtgatggaacatgccgaagctgccacgcgtaatgcggtgctgcaaggtgcaaac
ggctgggcggtgtatgacgattccctgccggaaaaaggacggggtaatgtgcgctggcgt
acgcttattgagcaaatgctcagccgtggtgggccgcgcatttatcaaaaacccgcagtg
atgcgaaacgggcaggttcaccatcgtgaattactgtgtcgcatttttgacggtacggaa
gaggtggtctccgctgaatatttgccgatggtgctgcagtttggtctttcagaagagtac
gaccgccagcaaattacgcgccttattccatttttatctttctggccggaggaaaatctg
gcattacagataaccgtagagtcgctgattcgcccgcgttttcagcgttggctgcgcgat
gtgctgatgcaatgtgaaaaatcgcagcgaaaacgcattatttttgaacttgcagaggca
gatgtctgtcaacacatcagccgcttacaaccggtcgttcgtctgatgaacgcactcggc
gctcgtgttgctgtgacacaggtgggtttaaccctagtgagtaccagttggatcaaggag
ctggatgttgagctgttaaaactgcatccggggctggtcaggaatattgaaaaacgcacg
gaaaaccagcttttagttcagagtctggttgaagcatgcaagggaacgcaaacgcaagtt
ttcgccacgggcatacgttcacgtagcgaatggcagatgttgacggagcgcggtgtggca
ggtggtcagggggattttattgcttcctctcagccgcttgacagcaatgtgaaaaaatat
ttgcaaagatactctgtttga
DBGET
integrated database retrieval system
