Lelliottia jeotgali: LJPFL01_4124
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Entry
LJPFL01_4124 CDS
T05035
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lef
Lelliottia jeotgali
Pathway
lef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJPFL01_4124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lef03019
]
LJPFL01_4124
Enzymes [BR:
lef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LJPFL01_4124
Messenger RNA biogenesis [BR:
lef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJPFL01_4124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASV57487
LinkDB
All DBs
Position
4411961..4413229
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHAKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTPQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPQSKYNPEALMSDLPPAKRLTRARSGNGPRRTGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacgcaaaagtt
atcgaagcccttgaaaataaaggctttcataactgcacgcccattcaagccctcgctctg
ccgctcacgctggcaggtcgcgatgttgcagggcaggcgcaaaccggtactggcaaaacg
atggcgtttttaacgtcaacgttccattatttactttctcatccagcaattgctgaccga
aaagttaaccaaccgcgtgcgctgatcatggctccaacgcgagaacttgcggtgcagatc
cacgctgacgcagaacctctggctcagaccactggcttgaagctgggtctggcttatggc
ggtgacggctatgataaacagctgaaagtgctggaaagcggcgttgatattcttatcggc
accacgggccgcctgattgattacgctaaacaaaaccatattaacctcggtgctatccag
gttgtggtactcgatgaagcagatcgcatgtacgatttgggcttcatcaaagacatccgc
tggttgttccgtcgcatgccacctactccgcagcgcctgaatatgctgttctccgcgact
ctctcttaccgcgttcgtgagctggcgttcgagcaaatgaacaacgccgaatatgtggaa
gtcgagccggagcaaaaaacaggtcatcgtattaaagaagagcttttctatccttccaac
gaagagaaaatgcgcctgctgcaaacgctgatcgaagaagagtggccagatcgcgccatt
atctttgcgaacactaagcatcgctgcgaagacatctggggccatcttgccgcagacgga
catcgcgtcggcctgctgacgggtgatgtggcacagaaaaaacgtctgcgcatccttgaa
gaatttacccgtggcgatctggatatcctggttgcaaccgacgttgctgctcgtggcctg
cacattccagccgtgactcacgtctttaactacgatcttcctgacgattgtgaagattac
gttcaccgtatcggtcgtaccggtcgcgcgggggccagcggccactctatcagccttgcc
tgtgaagagtatgccctgaatctgcctgccattgagacttacatcggccactctattccg
cagagtaaatacaatccggaagcactgatgagtgatctgccaccggcgaagcgcctgact
cgcgcccgctccggcaatggcccacgtcgcaccggcggagcaccacgtaaccgccgtcgt
tcaggttaa
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