Leptospirillum sp. Group II: ABH19_12255
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Entry
ABH19_12255 CDS
T04007
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
leg
Leptospirillum sp. Group II
Pathway
leg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH19_12255 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leg03021
]
ABH19_12255 (rho)
03019 Messenger RNA biogenesis [BR:
leg03019
]
ABH19_12255 (rho)
Transcription machinery [BR:
leg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABH19_12255 (rho)
Messenger RNA biogenesis [BR:
leg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABH19_12255 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_22
AAA
AAA_25
OB_RNB
S1CSD-TOTE-2
NACHT
ResIII
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AKS24352
LinkDB
All DBs
Position
complement(2416132..2417382)
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AA seq
416 aa
AA seq
DB search
MNLAELKEKSIAELTEVAKELHIEGAVNLRKQDLIFALLQAQSDKNGPITGEGVLEILQD
GFGFLRSPLYNYLPGPDDIYVSPSQIRRFNLRTGDTVWGQIRPPKEGERYFAMLKVEKVN
FEDSDSGREKILFDNLTPLYPMERIRLEHSQEDLSMRVMDLVTPIGKGQRGLIVAPPRTG
KTMLLQGLAKAISKNYPDIVLIVLLIDERPEEVTDMVRQVKGEVVSSTFDEPPQRHIQVA
EMVLEKAKRLAESQKDVVILLDSITRLARAFNTVAPPSGKVLSGGLDSNALQRPKRFFGS
ARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMELHLDRHLSDRRIFPAINVTLS
GTRKEELLLDKDDLNKIWILRKALNSNNPQDDMEYLLSNMKGTKGNKEFLERMMKG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgcggaattgaaagagaaaagtattgcggaactgaccgaggtggccaaggag
ctccatatagaaggggcagtcaaccttcggaaacaggatctgatctttgcccttctgcag
gcgcaatcggataaaaacgggcctatcactggagagggtgttcttgaaattctccaggac
gggtttggttttctccggtctcccctgtataactaccttcccggaccggacgatatctac
gtttctccttcccaaatccgaaggttcaatctgagaacgggagacaccgtctggggccaa
atacgtcctcccaaggagggagagcgctattttgcgatgctgaaagtggagaaggtcaac
tttgaagattctgactccggccgcgaaaagattctctttgacaatttgacgccgctctat
ccgatggaaaggatcaggctggaacattcccaggaagatctttccatgcgcgtcatggat
ttggtgacgcctatcggaaaaggtcagaggggcttgattgttgctcccccccgaaccgga
aagacgatgctgctccagggtcttgccaaggccatctccaaaaattatccggatatcgtt
ctgattgtcttgctgattgatgaacgaccggaagaagtgacggatatggttcggcaagtc
aagggtgaagtcgtcagctcgacttttgatgagccgccgcaaaggcatattcaggtagcc
gaaatggttttggagaaagccaagagattggcagagtcccaaaaagacgtcgtcattctc
ctggatagcattacgcgtttggcccgggcctttaatacggtggctcctccctccggaaag
gttctttccggaggactggactcgaacgcgttgcaacggccgaaacgttttttcggctct
gcccgcaatatcgaggaaggaggaagcctgacgatcattgccaccgcccttattgataca
gggagccggatggatgatgtgatttttgaggagttcaagggaacgggcaatatggagctt
catctggacagacatttatccgatcggagaatcttcccggccattaatgtcacgctttcc
ggaacccgaaaggaagaacttctgctcgacaaggatgacctgaacaagatctggatactc
cgcaaggcgctcaattcaaacaacccccaggatgatatggagtacttgctcagtaatatg
aaggggacaaaaggaaacaaggagtttttggaaagaatgatgaaaggctag
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