Leclercia sp. LSNIH3: C3F35_04730
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Entry
C3F35_04730 CDS
T05316
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3F35_04730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leh03019
]
C3F35_04730
Enzymes [BR:
leh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3F35_04730
Messenger RNA biogenesis [BR:
leh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3F35_04730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
DUF6482
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AUY38137
LinkDB
All DBs
Position
complement(973944..975308)
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AA seq
454 aa
AA seq
DB search
MSFDTLGLDPEILRAVEEQGYREPTPIQQQAIPAVLAGRDLMASAQTGTGKTAGFTLPLL
QRLIQKEPHAKGRRPVRALILTPTRELAAQVGENVREYSRYLNIRSLVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNAVKLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQVTQHVHMVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEIKLLRDI
ERLLKKEIPRIALDGYDVDPSIKAEPIQNGRQGGGRGQGGGRGQGGGGRGQQQPRRSEGG
APKAANKPPRRDGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatacccttggcctggacccggaaatcctgcgcgctgtagaagagcagggc
taccgcgaacctacccctattcagcagcaggccattcctgccgtgctggcaggccgcgat
ttgatggccagcgcccagaccggcaccggtaaaaccgcgggctttaccctgccgctgctg
caacgtctgatccagaaagagccgcacgccaaaggccgtcgcccggtgcgcgccctgatc
ctgaccccgacccgtgaactcgccgcccaggtgggcgagaacgtgcgtgagtacagccgc
tatctcaatatccgttcgctggtggtgtttggtggcgtgagcattaacccacagatgatg
aaactgcgcagcggcgtggacgtgctggtagccaccccgggccgtctgctcgatctggaa
catcagaacgccgtgaagctcgacagcgttgaaatcctggtgctcgacgaagccgaccgt
atgctcgacatgggcttcatccacgatattcgccgcgtgctggcaaaactgccggctcgc
cgccagaacctgctcttctccgccaccttctccgatgagatcaaagggctggcggaaaaa
ctgctgcacaacccgctggaagtggaagtggcgcgtcgcaacaccgcctccgagcaggtg
acccagcatgtccacatggtggacaaaaagcgtaagcgcgagctgctgtcacagatgatt
ggcgagggcaactggcagcaggtgctggtcttcacccgtaccaagcacggtgccaaccac
cttgcagaacagctgaacaaagacgggatccgcagcgcggccatccacggcaacaagagc
cagggggcacgtacccgcgcgctggcagattttaaatccggtgatatccgcgtgctggtg
gcaaccgatattgctgcccgtggcctggacattgaagagctgccgcacgtggtgaactac
gagctgccgaacgtgccggaagattacgttcaccgtatcggccgtaccggccgtgccgcg
gcaacgggcgaagccctgtcgctggtctgtgtggatgaaatcaaactgctgcgcgacatc
gaacgcctgctgaaaaaagagatcccacgtatcgctctcgacggctacgacgtagatccg
tcaatcaaagccgagccgatccagaacggtcgccagggtggcgggcgtggtcagggcggt
ggacgcgggcagggcggcggtggccgtggtcagcagcagccgcgccgtagcgaaggcggt
gcgccaaaagccgcgaacaaacctccgcgtcgtgacggcgacgccaaaccggcaggcgaa
cagcagcgccgacgccgtccgcgcaaacctgccgcagcgcagtaa
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