Leclercia sp. LSNIH3: C3F35_04815
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Entry
C3F35_04815 CDS
T05316
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3F35_04815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leh03400
]
C3F35_04815
DNA repair and recombination proteins [BR:
leh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3F35_04815
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C3F35_04815
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UB2H
AAA_22
DUF87
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AUY38152
LinkDB
All DBs
Position
complement(990390..992405)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKPFKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDFALRVELFDEEVERLSLFDPLTGQVESIIQR
FTVYPKTHYVTPRERIVQAMEDIKVELADRRKTLLDNNKLLEEQRISQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGRGKSRSPVEADTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL
HQLRDLFIAAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactgaattccgctttccgtccttccggcgatcagcctgaagcg
attcgccgtctgaaagaggggctggaggatgggcttgcacaccagacgctgctgggcgta
accggttcgggtaaaaccttcactgtcgccaacgtgatcgccgatctgcagcggccgacc
atggtgctggcaccgaataaaacgctggctgcgcagctgtacggcgagatgaaagagttc
ttccccgaaaatgcggtggagtatttcgtctcgtactacgactactatcagccggaagcc
tacgtccccagctccgatacctttatcgaaaaagatgcctcggtgaacgagcatatcgag
cagatgcgtctgtccgcgaccaaggcgctgcttgaacgccgtgacgtagtggtggtggca
tcggtatcagccatttacggcctcggcgatcccgatctctacctgaagatgatgctgcac
ctgacccaggggatgattatcgatcagcgcgccattttgcggcggttggcggagctgcag
tacacccgtaacgatcaggcgttccagcgtggcaccttccgtgttcgcggagaggtcatc
gatatcttcccggccgagtcggacgacttcgcgctgcgcgtcgagctgttcgatgaagag
gtcgagcgtctgtcgctgtttgacccgctgaccggccaggtggagtcaattattcagcgc
ttcaccgtctacccgaaaacccactacgtgaccccgcgcgagcgcatcgtgcaggcgatg
gaagatatcaaagtcgagttggcggatcgccgcaaaacgctgctggacaataacaagctg
ctggaagagcaacgtatcagccagcgtacccagttcgatctcgagatgatgaacgagctg
ggctactgctccgggattgaaaactactcgcgctatctctctggccgcgggccgggggag
gcaccgccaaccctgtttgactacctgccggcggatggcctgctggtggtggacgaatcc
cacgtcaccattccgcagattggcgggatgtatcgtggcgaccgggcgcgtaaagagacc
ctggtggagtacggcttccgcctgccgtcagcgctggataaccgcccaatgaagtttgaa
gagtttgaggcgctggcaccgcaaaccatttacgtttccgcaacgccgggcaactacgag
ctggagaaatcgggcgacgaagtggtcgatcaggtggtgcgtccgacaggcctgctggat
ccgattatcgaagtgcgcccggttgcgacgcaggtggatgacctgctgtcggagatccgc
gcccggtcggccatcaacgagcgcgtgcttgtcaccaccctgaccaaacgcatggccgag
gatctgaccgaatacctcgaggagcacggcgagaaggtgcgctatctgcactccgatatc
gacaccgtggagcgaatggagatcatccgcgatctgcgtcttggcgagttcgacgtgctg
gtggggatcaacttgctgcgtgaagggctggatatgccggaagtgtcgctggtggcgatt
ctggatgccgataaagagggcttcctgcgctctgagcgctcgcttatccagaccattggt
cgcgctgcgcgtaacgtcaacggcaaagcgattctctacggcgacaaaatcaccccatca
atggcaaaagcgattggggaaacggaacgccgtcgcgagaagcagcaggcctacaacgaa
gagcacggcattacgccgcagggtctgaacaagaaggtggtggatatcctggcgctcggc
cagaacatcgccaaaaccaaagcgaaaggtcgcggcaagtcacgctcaccggtggaggct
gataccgttgccctgacgccgaaggcgctgcagcagaaaattcacgagctggaagggcag
atgatgcagcatgcgcagaatctggagttcgaggaggccgcgcagatccgcgaccagctg
caccagctgcgggatctgtttatcgccgcgtcctag
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