Leclercia sp. LSNIH3: C3F35_08190
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Entry
C3F35_08190 CDS
T05316
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
leh
Leclercia sp. LSNIH3
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leh03021
]
C3F35_08190
Transcription machinery [BR:
leh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
C3F35_08190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUY38759
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All DBs
Position
1691950..1694856
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPATGENRLYARNDSPVTRVMFNPGDT
VTSHEGWQLKIEDVKEENGLLAYIGTRLDTEEADVMLREVLLDSKLVFSKPQDRLFAGQI
DRMDRFSLRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRYAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH
DADNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDIMVVDEAHHLVWSEDAPSREYMAIE
QLAERVPGVLLLTATPEQLGLESHFARLRLLDPNRFHDFALFVEEQNNYRPVADAVALLL
AGKHLSNEELNTLGELIGEQDIEPLLQAANSDREGAEAARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTANRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASRLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWFHEGLDAFEHTCPTGRTIYDNVHSELTGYLAAPENT
DGFDDLIKTCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLISFAM
NLFDIVGINQDDRGENMIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLSRFLPATP
VRLLLDKNGTNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVYTILQQGELQIEKAAR
ALIDAARSEADEKLSAELSRLEALRAVNPNIRDDELAAIESNRQQVLESLNQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttgggttagga
actgtggttgcgctggatgcgcgtatggtgactctccttttccccgccaccggtgaaaac
cgtctgtatgctcgcaatgattcccctgttacccgcgtgatgttcaacccgggcgacacc
gttaccagccatgagggctggcagctgaagattgaagacgtaaaagaagagaatggactg
ctcgcctatatcggcactcgcctcgataccgaagaggccgatgtcatgctgcgcgaagtg
ctgctcgacagcaaactggtatttagcaagccacaggatcgcctgttcgccggtcagatt
gaccgtatggatcgcttctcgctgcgctaccgcgcgcgtaagttccagagcgaacagtac
cgtatgccgtggagcggcctgcgcggccagcgtaccagcctgatcccccatcagttaaac
attgcccatgatgtcggccgccgctatgcgccgcgcgtcctgctggccgatgaggtgggg
ttaggtaaaaccatcgaagcgggcatgattttgcatcagcagctgctctccggcgcagcc
gagcgcgtgctgattgtggtgccggaaaccctgcaacaccaatggctggtggagatgctg
cgccgctttaacctgcgtttctccctgtttgacgatgagcgctacgccgaagcccagcac
gatgccgataacccgttcgaaaccgaacagctggtgatctgctccctggactttgttcgc
cgtagcaaacagcgcctagagcatctgtgcgacgccgagtgggacatcatggtggtcgac
gaagcccatcacctggtctggagcgaagatgcgccgagccgtgagtacatggcgattgaa
cagctggccgagcgcgtaccgggtgtgttactgctgaccgctaccccggaacagctgggt
ctggagagccactttgcgcgtctgcgtctgctggatccaaaccgcttccatgacttcgcg
ctctttgtcgaagagcagaacaattaccgcccggtagccgacgccgttgccctgctgctg
gcgggcaagcacctctccaacgaggagctgaacaccctgggcgagctgattggcgaacag
gatatcgagccgttgctacaggccgccaacagcgatcgtgagggtgctgaagccgcgcgt
caggagctggtctccatgctgatggatcgccacggcaccagccgcgtcctgttccgtaac
acccgtaacggggtgaaaggcttccctaaacgcgagctgcataccattcgcctgccgctg
ccgacccagtaccagacggcgatcaaggtgtcaggcatcatgggtgcgcgcaaaacagca
gaagagcgtgcccgggacatgctttacccggaacagatttatcaggaatttgaaggcgac
agtggcacctggtggaacttcgatccccgcgttgagtggctgatgggctatctgaccgcc
aaccgctcgcagaaggtgctggtgatctgcgccaaagcgaccactgcgctccagcttgag
caggttctgcgcgagcgggaaggtatccgcgcggcagtgttccatgaaggcatgtccatt
attgaacgtgaccgtgcggcggcgtggttctccgaagaggacagcggcgcacaggtgctg
ctctgctccgaaatcggctccgaagggcgcaacttccagttcgccagccgtctggtgatg
tttgatctccccttcaacccggatctgctggagcagcgtatcggccgtctggatcgtatt
ggccaggcacacgacattcagatccacgtcccgtatctggaaaaaaccgcccagtcagta
ctggtgcgctggttccacgaaggactggatgcgtttgaacatacctgcccgaccggacgt
actatttacgacaacgtgcacagcgagctgaccgggtatctggcggcaccggaaaacacg
gacggtttcgacgatctgatcaaaacctgccgcgagcagcatgaagccctgaaagcgcag
ctggaacagggccgtgaccgtctgctggagatccactccaacggtggcgaaaaggcccag
gcgctggccgagagcatcgaagagcaggatgacgataccagcctgatcagcttcgccatg
aacctgtttgatatcgtcggtatcaaccaggacgatcgcggcgagaacatgattgtgctg
acgccgtccgatcatatgctggtcccggatttcccgggcctgccggaagatggctgcacc
atcacctttgaacgtgatgtggcactctcccgcgaggatgcccagttcatcacctgggag
catccgctgatccgtaacggtctggatctgatcctctccggcgataccggtagcagtacc
atttcgctgctgaagaacaaggcgctgccggtggggacactgctgctggagctgatctac
gtggttgaagcccaggcaccgaaacagctgcagctcagccgcttcctgccagccacgccg
gtgcgtctgctgctggataagaacggcaccaacctggcggcgcaggtggagtttgagagc
tttaaccgtcaactgagtgcggtgaaccgccacaccggcagcaagctggtgaacgcggtg
cagcaggacgtctataccatcctgcagcagggtgagctgcagatcgagaaagcggcgcga
gcattgattgacgcggcacgcagcgaagcggatgaaaaactgtcggcggagctgtcgcgt
ctggaagccctgcgcgcggtcaatccgaacattcgtgacgatgaactggcggcgattgag
agcaatcgtcagcaggtgctcgaaagcctgaatcaggcgggatggcgtctggatgcgctg
cgtctcatcgttgtgacgcatcagtaa
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