Leclercia sp. LSNIH3: C3F35_10465
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Entry
C3F35_10465 CDS
T05316
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
leh
Leclercia sp. LSNIH3
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
leh03016
]
C3F35_10465
Enzymes [BR:
leh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C3F35_10465
Transfer RNA biogenesis [BR:
leh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C3F35_10465
Prokaryotic type
tRNA splicing ligases
C3F35_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AUY39175
LinkDB
All DBs
Position
complement(2159404..2160630)
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AA seq
408 aa
AA seq
DB search
MKKNDFDVLTAQHSAPVKMWTHGVPVEPEAREQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAADLPDNLHGLRSAIEQAVPHGRTNTRS
RRDKGAWEKTPDEVDNHWATLAPRFKRLTDKYPQLLKTNNHQHLGTLGTGNHFIEICLDE
QQRVWVMLHSGSRGVGNAIGNVFITLAQKDMQQHIANLPDRNLAYFQEGSRHYNDYIEAV
EWAQDFARHNREVMMARVLAALSRIVPKPFLTQQEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAQKGEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTAAKKRFTVADQIRA
TAHVECRKDNEVIDEIPMAYKDIDAVMAAQASLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaatgattttgacgtgttaacggcgcagcacagtgcgcccgtaaaaatgtgg
acgcatggcgtgcccgtggagccagaggcgcgcgagcagctgctgaataccgcgaagatg
ccgtttatttttaaacatctggcggtgatgccggatgtccatctcgggaaaggctccacc
attggcagcgtgatccccaccaaaggggccatcattccggcggcggtgggggtggatatc
ggctgcgggatgattgccgtgcgaacatcccttctggcagccgatctgccggataatctt
cacggtctgcgcagcgccattgagcaggcggtgccacacgggcgcaccaatacccgctcc
cgtcgcgacaagggagcatgggagaagacgccggatgaagtggataaccattgggcgacg
ctggcaccccgttttaaaaggctgacggataagtacccgcagctgctgaaaaccaataac
catcagcatctgggcacgctgggtaccggaaatcactttatcgagatctgcctggacgag
cagcaacgcgtgtgggtcatgctgcacagtggctcgcgcggcgtgggcaacgcgatcggc
aatgtgtttatcactctggcgcagaaagatatgcagcagcatatcgccaacctgccggac
agaaacctggcctacttccaggaggggagtcggcactataacgattacatcgaagccgtg
gagtgggcgcaggattttgcccgccataaccgcgaggtgatgatggcgcgcgtgctggcc
gcgctctcgcgcattgtgccaaaacctttcctgacccagcaggaggcggtgaattgccat
cacaactatgtccagaaagagcggcattttggtgaagaggtactggtgacgcgcaaaggg
gcggtatcggcgcagaagggcgagatggggatcatccccggctcgatgggcgcgaagagc
tttatcgtgcgcggcctgggcaatgaagagagcttttgctcctgcagccacggggcaggg
cgggtgatgagccggacggcggccaaaaaacgcttcaccgttgccgatcagatccgcgcc
acggcccatgtcgagtgcagaaaagacaacgaggtgatcgatgagatcccgatggcctat
aaagacattgatgccgttatggcggcccaggcctcactggtcgaaatcgttcataccctg
cgtcaggttgtgtgtgtaaaaggataa
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