Leclercia sp. LSNIH3: C3F35_11165
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Entry
C3F35_11165 CDS
T05316
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C3F35_11165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leh03400
]
C3F35_11165
Enzymes [BR:
leh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C3F35_11165
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C3F35_11165
DNA repair and recombination proteins [BR:
leh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C3F35_11165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7351
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AUY39298
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Position
complement(2307983..2308792)
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AA seq
269 aa
AA seq
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MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSDEIHTLSDKPVLSVQRRAKYLL
LELPDGWIIIHLGMSGSLRILSEELPAEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKEL
EGHNVLAHLGPEPLSDAFDAEYLKAKCAKKKSPIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSAQECELLVRVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRK
DEPCRVCGAPIVATKHAQRATFYCRQCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggtagagaccagccgccgtggcattgagcctcacctggtcggt
gcgaccattcttcacgctgttgtccgtaacggccgcctgcgctggccggtttctgatgag
atccacacgctgagtgacaaacctgttctcagcgtacagcgccgcgcgaagtacctgctg
ctggaactgccggatggctggatcatcatccatctggggatgtccgggagcttacgcatc
cttagcgaagagctgcccgcagaaaagcacgaccacgttgacctggtgatgagcaacggc
aaagtgctgcgctataccgatccccgtcgctttggtgcctggctgtggactaaagagctg
gaagggcataacgtgctggcgcacctggggccggagccgctctcggacgcctttgacgcg
gaatacctgaaagcgaagtgcgcgaagaaaaaatccccgattaaaccctggctgatggat
aacaagctggtggtcggcgtcggtaatatatatgccagtgaatcgctctttgccgccggg
atccatcccgatcgcttagcctcatcgctttctgctcaggagtgtgagctgttggtcagg
gtgatcaaagcggtgctgctgcgttcgattgagcagggcggaaccaccctgaaggatttc
ctgcaaagcgacggtaagccgggctactttgcccaggagctgcaggtttatggccgtaaa
gatgaaccatgccgggtctgcggtgcgccgattgtggcaacgaagcacgcgcagcgcgcc
accttctactgccgtcagtgtcagaaataa
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