KEGG   Leclercia sp. LSNIH3: C3F35_12615
Entry
C3F35_12615       CDS       T05316                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
leh  Leclercia sp. LSNIH3
Pathway
leh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:leh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C3F35_12615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leh03019]
    C3F35_12615
Enzymes [BR:leh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C3F35_12615
Messenger RNA biogenesis [BR:leh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C3F35_12615
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CCDC138_C ERCC3_RAD25_C AAA_22 CMS1
Other DBs
NCBI-ProteinID: AUY39556
LinkDB
Position
complement(2615290..2616555)
AA seq 421 aa
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLSAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPQSKYNPEALLSELPPAKRLTRARSGNGPRRNSAPRNRRRS
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaagtc
atcgaagcccttgaaaataaagggtttcataactgcacgcctattcaggctctcgccctc
ccgctaacgctggcaggtcgcgatgttgcagggcaggcgcaaaccggtactggcaaaacg
atggcgtttttaacgtcaacgtttcattatttactttctcacccggcaattgctgaccgc
aaagttaaccagccgcgcgcgctgattatggccccgacgcgagaactggcggtacagatc
cacgctgacgcagagccactggcacagtccaccggcctgaaactcggcctggcctacggc
ggtgacggttatgacaaacagctgaaagtgctggaaagcggcgtcgatattctgatcggc
accaccggccgtctgattgattacgctaaacagaaccacatcaacctcagcgctatccag
gttgtggtgctggatgaagccgatcgcatgtacgatctcggctttattaaagatatccgc
tggctgttccgtcgcatgcctgccgctaaccagcgtctgaacatgctgttctcggcaacg
ctgtcgtatcgcgtccgtgagctggcgttcgaacagatgaacaacgccgaatacgtcgaa
gtggaaccggaacagaaaaccggccaccgtattaaagaagaactcttctatccgtcgaac
gaagaaaagatgcgtttactgcaaacgctgatcgaagaagagtggccagatcgcgctatc
gtgttcgccaacaccaaacaccgctgtgaagatatctggggccacctggctgcggatgga
catcgtgtaggtctgttgaccggcgacgtcgcgcagaaaaaacgcctgcgcatccttgaa
gaatttacccgtggcgacctggatattctggtggcgacggacgtggctgcacgcggcctg
cacatcccggcagtgacccatgtctttaactacgacctgccggatgattgcgaagattac
gttcaccgtatcggtcgtaccggtcgtgcgggcgccagcggtcactctatcagcctcgcc
tgtgaagagtacgctctgaacctgccagcgattgagacctatatcggtcactcgattccg
cagagtaaatacaacccggaagcgctattaagcgaactgccgccagcgaagcgcctgacg
cgcgcccgttccggcaatggcccgcgccgtaacagcgcaccgcgtaaccgtcgtcgttca
ggctaa

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