Leclercia sp. LSNIH3: C3F35_12630
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Entry
C3F35_12630 CDS
T05316
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3F35_12630 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leh03021
]
C3F35_12630 (rho)
03019 Messenger RNA biogenesis [BR:
leh03019
]
C3F35_12630 (rho)
Transcription machinery [BR:
leh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3F35_12630 (rho)
Messenger RNA biogenesis [BR:
leh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3F35_12630 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AUY39558
LinkDB
All DBs
Position
2617367..2618626
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atgggactggaaaaccaggctcgtatgcgcaagcaggacatcatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatattgcaggac
ggatttggtttcctccgctctgcagacagctcctacctcgccggtcctgatgatatctac
gtttcccccagccaaatccgccgtttcaacctccgcactggtgacaccatttcaggtaag
attcgtcctcctaaagagggtgaacgctactttgcgctgttgaaagttaacgaagttaac
tacgacaaaccagaaaactcgcgcaataagatcctgtttgaaaacttaacgccgctgcac
gcgaactcgcgtctgcgcatggagcgtggtaacggttctaccgaagacttaaccgctcgc
gttctggatctggcgtctccgattggtcgtggccagcgtggtctgattgtggcaccgcca
aaagcgggtaaaaccatgctgctgcagaatatcgcgcagagcatcgcttacaaccaccca
gactgtgtgctgatggtgctgctgattgacgaacgtccagaagaagtaaccgagatgcag
cgtctggtgaaaggtgaagttgtggcttctaccttcgacgaaccagcatcccgccacgtt
caggttgcggaaatggttatcgagaaggcgaagcgtctggttgagcataaaaaagacgtt
atcatcctgctcgactctatcacccgtctggcgcgtgcttacaacaccgtggttccggct
tccggtaaagtgctgaccggtggtgtggatgccaacgccctgcaccgtccgaagcgtttc
ttcggtgctgcgcgtaacgtggaagagggcggtagcctgaccatcatcgcaacggcgctg
atcgataccggctcgaagatggatgaagttatctacgaagagtttaaaggtacaggcaac
atggaactgcacctgtctcgtaagattgcagaaaaacgtgtcttcccggcgatcgactac
aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg
tggatcctgcgcaaaattatccatccaatgggtgaaatcgacgcaatggaattcctcatt
aacaaactggcgatgaccaaaactaacgacgatttcttcgatatgatgaagcgctcgtaa
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