Leclercia sp. LSNIH3: C3F35_17590
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Entry
C3F35_17590 CDS
T05316
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
leh
Leclercia sp. LSNIH3
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
leh03009
]
C3F35_17590
Enzymes [BR:
leh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3F35_17590
Ribosome biogenesis [BR:
leh03009
]
Prokaryotic type
rRNA helicases
C3F35_17590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF561
AAA_11
AAA_30
ERCC3_RAD25_C
AAA_22
CMS1
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AUY40447
LinkDB
All DBs
Position
complement(3618974..3620296)
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AA seq
440 aa
AA seq
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MTVTTFSELELDESLLEALQNKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAVQVAEHARELAANTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLMQYIKEENFDCRAVETLILDEADRMLELGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIKDFAERLLNDPAEVSATPSTRERKKIHQWYYRADNYEHKLELLK
HLLKQDDTTRTIVFVRKRERVHELAEQLRAAGINNCYLEGEMAQIKRTEGIKRLTEGRVN
VLIATDVAARGIDIPEVSHVINFDMPRSGDVYLHRIGRTGRAGLKGTAISLVEAHDYLLL
QKVGRYIEEPVKARVIDELRPTTRPPSEKMTGKPSKKVLAKRAEKKEKEKEKPRVKQRHR
DAKNIGKRRKPSGSEPASQK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaacttgaactcgacgaaagccttctggaagccctccag
aataaaggcttcacacgcccgactgccatccaggcggcagccattccgcctgcgttagaa
ggccgcgacgtactcggttcagcgccgacaggcaccggtaaaacggcggcgtacctgctg
cctgtcttgcagcatctgattgatttcccccgcaagaaatccggtccaccgcgtatcctt
attctgaccccaacacgtgagttagccgttcaggttgcggagcatgcgcgtgaactggcc
gccaatacccatctggatattgcgaccatcaccggtggcgtagcctatatgaaccacgcc
gaagtgttcagtgagaaccaggatatcgtggtcgccaccaccgggcgtttgatgcagtac
atcaaagaagaaaactttgattgccgtgctgttgaaacgctgattctggatgaagcggat
cgcatgctggagctgggcttcgcgcaggatattgaacacatcgcaggcgaaacccgctgg
cgcaaacagaccatgctgttttctgccacgcttgaaggcgatgcgattaaagactttgct
gagcgtctgcttaacgatccggcagaagtttctgccacgccgtccacgcgcgagcgcaaa
aaaattcaccagtggtattaccgtgctgataactacgagcataagctcgagttgcttaaa
catctgttaaaacaagatgacacgacccgtaccatcgtctttgtacgtaaacgcgaacgt
gtgcacgaactggctgaacaacttcgcgccgcgggcattaacaactgttatctcgaaggt
gagatggcgcagattaaacgtaccgaagggattaaacgcctgaccgaaggtcgcgtgaat
gtcttgattgccacggacgtggcagcgcgtggtatcgacattcctgaagtgagccatgtg
attaacttcgacatgccgcgcagcggagatgtttaccttcaccgtatcggtcgtaccggg
cgtgcaggccttaaaggcaccgcgatttctctggttgaggcgcatgactatctgctgctg
cagaaagtgggtcgctacatcgaagagccggtgaaagcgcgcgtgattgacgaactgcgc
cctactacgcgcccaccaagcgaaaaaatgacgggtaaaccgtcgaagaaagttctcgcc
aagcgcgcagagaaaaaagagaaagaaaaagagaaaccgcgtgtgaagcaacgccaccgt
gatgccaaaaacattggtaaacgtcgcaagccaagtggcagtgaacctgcttcacagaaa
taa
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