Leclercia sp. LSNIH1: C2U54_00160
Help
Entry
C2U54_00160 CDS
T05297
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lei
Leclercia sp. LSNIH1
Pathway
lei03410
Base excision repair
lei03430
Mismatch repair
lei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C2U54_00160
03430 Mismatch repair
C2U54_00160
03440 Homologous recombination
C2U54_00160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lei03400
]
C2U54_00160
DNA repair and recombination proteins [BR:
lei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C2U54_00160
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C2U54_00160
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U54_00160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AUU82540
UniProt:
A0AAD0D0P5
LinkDB
All DBs
Position
complement(29562..31295)
Genome browser
AA seq
577 aa
AA seq
DB search
MKSSTQLRRREVDESAALPATLPPLLRRLYASRGVRNADDLERSVKGMLSWQQLSGVERA
TELLYNALREGTRIIVVGDFDADGATSTALSVLSLRAMGCDNVSYLVPNRFEDGYGLSPE
VVDQAHARGAQMILTVDNGISSHSGVERAHEFGIPVLVTDHHLPGDTLPAAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRTRLRDEGWFDAKGIAPPNLAEFLDLVALGTVADVVPL
DANNRILTWQGLNRIRAGKCRPGIKALLEISNRDPLRLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALILCEKLERSGDSLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLHTLHP
GLMIKFGGHAMAAGLSLEEAKFDQFQRLFSELVTDWLDPALLQGEVVTDGPLAPADMTME
VAQMLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTT
IWPDNGVREVELAYKLDINEFRGNRSLQIIIDHIWPL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgacacaacttcgtcgtcgtgaagtggacgagagcgccgcgttacccgcg
acgctccctccgctgttgcgtcggctctatgccagccgtggcgtgcgaaatgcagatgac
cttgaacgcagcgtaaagggtatgctctcctggcagcagcttagcggcgtcgaacgcgcc
accgagctgctgtacaacgccctgcgggaaggaacgcgcatcattgtggtgggggatttt
gacgccgatggcgccaccagtaccgcgctgagcgtgctcagcctgcgggcgatggggtgc
gacaacgtctcatatctggtgccgaaccgctttgaggatggctatggcctgagtccggaa
gtggtggatcaggctcacgcccgcggcgcgcagatgatcctgacggtggacaacgggatc
tcctcccactccggagttgagcgcgcccatgaatttggcatcccggtgctggtcaccgat
caccacctgcctggggataccttaccggcggcagaagcgatcgttaaccccaacctgcgc
gactgcgacttcccgtcgaaatcgctggcgggggtgggggtggctttctatctgatgctg
gcgctgcgtacacggctgcgtgatgaagggtggtttgacgctaaaggtattgcgccgcct
aatctggcggaattccttgatctggtggcgctgggcaccgtagcggacgtggtgccgctg
gatgccaataaccgtattctgacctggcagggtttgaaccgcattcgggcggggaaatgc
cgtccgggtatcaaggcgctgctggagatctccaaccgggacccgctgcggctggcggcc
agcgatctcggctttgcccttggcccgcgtctgaacgctgccggacgtctggacgatatg
tcggtgggcgtagcgctgctgctgtgcgataacatcggcgaggcgcgcgtactggccaac
gagctggacgcgctgaaccagacccgcaaagagatcgagcaggggatgcaggccgaagcc
ctgatcctctgcgaaaagctggagcgcagcggcgactcgctgcccggcgggctggcgatg
tatcaccccgagtggcatcagggggtggtgggcatcctcgcctcgcgcattaaagagcgt
tttcaccgcccggtgatcgcctttgcccctgccggagacggcaccctgaaaggatccggc
cgctcgattcaggggctgcatatgcgcgacgcgctggagcgcctgcatacgctgcatccg
gggctgatgattaaatttggcggccacgccatggcggcgggactgtcgctggaagaggcg
aaatttgaccagttccagcgcctgttcagcgagctggtcaccgactggctggatccggct
ctgctccagggcgaagtggtcaccgatggcccgctggcgccggcggatatgaccatggag
gtggcgcagatgctgcgcgacgccggtccgtgggggcagatgttcccggagccgctgttt
gacgggcgttttcgcctgctgcaacagcgtctggtgggggaacggcatctgaaggtgatg
gtggaaccggttggcggcggtccgctgctggacggtatcgcctttaacgtggacaccaca
atctggcctgataacggcgtacgcgaagtcgaactggcctataaactggatattaacgag
tttcgcggcaaccgcagcctgcaaatcatcatcgaccatatctggccactttag
DBGET
integrated database retrieval system
