Leclercia sp. LSNIH1: C2U54_02335
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Entry
C2U54_02335 CDS
T05297
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
lei
Leclercia sp. LSNIH1
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lei03019
]
C2U54_02335
Messenger RNA biogenesis [BR:
lei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C2U54_02335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
AUU82926
UniProt:
A0AAD0DBC8
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All DBs
Position
complement(445412..447352)
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AA seq
646 aa
AA seq
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MRLSTKFSAFISLLTGLTIFVTFIGCSLSFYNAIQGKLANRVHSVASVIDSRLVSTPFPE
LSRQLDELMAPVDIMRVEIKQGGNLLLSHTGHTHYRQVGSPPQMLQLTVPSLKNPGMTIS
LVYLDPMTSYFRSLMTTAPLTVAVIFIVVLIFLAVRWLRRQLAGQELLESRSTRILNGER
GAQVRGSVYEWPSRTSSALDVLLSEIQFASDQRSRIDTLIRSYAAQDNKTGLNNRLFFDN
QLGTLLEDQENVGTHGVVMIIRLPDFDLLKDNWGRAVAEEQQFTLINMLSTFIMRYPGAL
LARYHRSDYAVLLPHRTLKESESIAGLLLKSVDALPPSKMLDRDDMVHIGICAWRGGQST
EQVMEHAEAATRNAVLQGANGWAVYDDSLPEKGRGNVRWRTLIEQMLTRGGPRIYQKPAV
LTSGKVHHRELLCRIFDGNEEVISAEYLPMILQFGLSEEYDRQQISRLMPFLSYWPEENL
ALQVTVESLIRPRFQRWLRDLLMQCEKSQRKRIIFELAEADVCQHISRLQPVVRLINALG
ARVAVTQAGLTLVSTSWIKALEVELLKLHPGLVRNIEKRTENQLLVQSLVEACKGTQTRV
FATGVRSRTEWQTLTERGVTGGQGDFFAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattatcgacgaagttctccgcttttatctccttgcttaccgggttgaccatattc
gtcacctttatcggctgttcgctcagtttttataatgcgatccagggaaagctggcgaac
cgcgtccactccgtggcgtcagtgattgattcccgccttgtcagcacaccctttccagaa
ctttcccgtcaactggatgagctgatggccccggtggatatcatgcgggtggagattaag
cagggcggcaacctccttttaagccacaccgggcatacgcattaccggcaggtgggttca
cctccgcagatgctccagctcaccgtcccctccctgaaaaaccccggtatgacgataagc
ctggtctatctggacccaatgaccagttattttcgttcattgatgactaccgcaccgctc
acggtggcggtgattttcatcgtggtgctgatcttcctggcggtgcgctggctgcggcgt
cagctcgccggacaggagctactggagtcgcgttctacgcggatccttaacggtgaacgc
ggcgcgcaggtgcgcggctcggtctatgagtggccctcacgcaccagcagcgcgttggac
gttttgctgtccgaaattcagttcgccagcgaccagcgcagccggatagataccctgatc
cgatcctatgccgcccaggacaataaaaccggcctcaataaccgcctgttctttgataat
cagctgggcactttgctggaagatcaggagaacgtgggcacacatggggtggtgatgatt
atccgtctgccggacttcgatctgctgaaagataactgggggcgggcagtggcggaggag
cagcagtttacgctcattaatatgctctccacctttatcatgcgttaccccggcgcactg
ctggcacgctatcaccgcagtgattacgccgtattgttgccgcaccgcacgctgaaggag
tctgaaagcattgccgggctgctgttgaaatcggtggatgcgctcccacccagcaaaatg
ctcgatcgtgatgacatggtgcatatcggcatctgcgcctggcgcggcggccagtctacc
gagcaggtgatggaacatgccgaggctgccacccgtaatgcggtgttgcaaggggcgaac
ggctgggcggtttatgatgactccctgcccgaaaaaggacgcggcaacgtgcgctggcga
accttaatcgagcagatgctgacccgaggcggaccgcggatttaccaaaaaccggcggtg
ctgaccagcggcaaggtccatcatcgggaactgctctgtcgaatcttcgacggcaacgaa
gaggtgatatcggccgagtatctgccgatgatcctgcagtttggcctgtctgaagagtac
gatcgccagcagatatcgcgcttgatgccatttttatcctactggcccgaagagaacctg
gcgctgcaggtgacggtggagtcgttgatccgcccgcgtttccagcgctggctgcgggat
ctgctgatgcaatgtgaaaaatcgcagcggaaacggattatttttgaacttgcagaggcg
gatgtttgtcaacacatcagtcggttacagccggttgttcggctgattaacgcgttgggc
gcgcgcgtcgcggtgacgcaggcgggtttaacgctggtcagcaccagctggatcaaggcg
ctggaggttgagctcctgaagctgcatccggggctggtaagaaatattgaaaagcgcacg
gaaaaccagctgctggtacagagcctggtggaagcgtgcaaaggaacgcaaacgcgtgta
tttgctacgggtgtgcggtcgcgaacggaatggcagacattgacagagcgcggcgtgaca
gggggtcagggcgatttttttgcggcctctcagcctcttgacagcaatgtgaaaaaatat
tcgcaaagatactctgtttaa
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