KEGG   Leclercia sp. LSNIH1: C2U54_06860
Entry
C2U54_06860       CDS       T05297                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lei  Leclercia sp. LSNIH1
Pathway
lei02024  Quorum sensing
lei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C2U54_06860
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    C2U54_06860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lei03019]
    C2U54_06860
   03036 Chromosome and associated proteins [BR:lei03036]
    C2U54_06860
Messenger RNA biogenesis [BR:lei03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     C2U54_06860
Chromosome and associated proteins [BR:lei03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    C2U54_06860
SSDB
Motif
Pfam: Hfq LSM Herpes_capsid Hfq_1
Other DBs
NCBI-ProteinID: AUU83750
LinkDB
Position
1362023..1362331
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGSSNYHHGSNAQGSSAPAQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcttgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggtcagattgaatctttcgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttataagcacgcgatttct
actgttgttccgtctcgcccggtatctcatcacagcaataacgctggcggcggttccagt
aactaccatcatggcagcaacgcgcagggttcttctgcgcctgcgcaggacagcgaagag
accgaataa

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