Leclercia sp. LSNIH1: C2U54_11745
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Entry
C2U54_11745 CDS
T05297
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lei
Leclercia sp. LSNIH1
Pathway
lei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U54_11745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lei03019
]
C2U54_11745
Enzymes [BR:
lei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U54_11745
Messenger RNA biogenesis [BR:
lei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U54_11745
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
DUF6482
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AUU84635
LinkDB
All DBs
Position
2373331..2374692
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AA seq
453 aa
AA seq
DB search
MSFDTLGLNPEILRAVAEQGYREPTPIQQQAIPAVLAGRDLMASAQTGTGKTAGFTLPLL
QRLISSEPHAKGRRPVRALILTPTRELAAQVGENVREYSRYLNIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKKEIPRIALEGYDVDPSIKAEPIQNGRQGGRGQGGGRGQGGGGRGQQQPRRSEGGA
PKAANKPPRRDGEGKPAGEGQRRRRPRKPSAAQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatacccttggcctgaacccggaaattctgcgcgctgtagcggagcagggt
taccgcgaaccgacccctatccagcagcaggccattcccgctgtactggcaggccgcgat
ctgatggccagcgcccagaccgggaccggtaaaaccgccggctttaccctgccgctgctg
caacgcctcatctcaagcgaaccgcacgccaaaggccgtcgcccggtacgcgccctgatc
ctgaccccaacccgtgaactggccgcccaggtgggtgagaacgtgcgtgagtacagccgc
tatctcaacatccgctcgctggtggtgtttggcggggtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtggacgtgctgatcgccacgccgggccgcctgctcgacctggaa
caccagaacgccgttaagctcgacagcgtggagattctggtgctcgacgaagccgaccgc
atgctggacatgggctttatccacgatattcgtcgcgtgctggcaaaattgccggcccgc
cgtcagaacctgctcttttctgccaccttctccgacgagatcaaaggcctggcggaaaag
ctgctgcacaatccgctggaagtggaagtggcgcgtcgcaacaccgcctccgaacaggtg
acccagcatgttcactttgttgataaaaagcgcaagcgcgaactgctctcccagatgatt
ggtgaaggcaactggcagcaggtgctggtctttacccgtaccaagcacggggcgaaccac
ctggcggaacagctgaacaaagacggcatccgcagcgcggccatccacggtaataagagc
cagggggcacgtacccgcgcgctggccgatttcaaatcgggtgatatccgcgtactggtg
gcaaccgacatcgccgcccgcggtctggatattgaagagctgccgcacgtggtgaactac
gagctgccgaacgtcccggaagattatgtccaccgtatcggccgtaccggtcgcgcggcg
gcaacgggcgaagcgctgtcgctggtctgtgttgatgagcacaagctgctgcgcgacatt
gaacgcctgctgaaaaaagagatcccgcgtatcgccctcgagggctatgacgttgatccg
tccatcaaggccgagccgatccagaacgggcgtcagggcgggcgtggtcagggcggtgga
cgcgggcagggcggcggtggacgtggtcagcagcagccgcgccgtagcgaaggcggcgcg
ccgaaagcggcaaataaaccgccgcgtcgcgatggcgagggcaaaccggcgggtgaaggc
cagcgtcgacgccgtccgcgcaagccgtcagcagcgcagtaa
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