Leclercia sp. LSNIH1: C2U54_13530
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Entry
C2U54_13530 CDS
T05297
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lei
Leclercia sp. LSNIH1
Pathway
lei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U54_13530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lei03019
]
C2U54_13530
03009 Ribosome biogenesis [BR:
lei03009
]
C2U54_13530
Enzymes [BR:
lei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2U54_13530
Messenger RNA biogenesis [BR:
lei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2U54_13530
Ribosome biogenesis [BR:
lei03009
]
Prokaryotic type
rRNA processing factors
C2U54_13530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AUU84959
LinkDB
All DBs
Position
complement(2740896..2744111)
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARLGGVRCVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEYSERKLPEQPALAAFVMPEAPPA
PAQETVAAKPAAKPAAEVSQPAEQPGLLSRFLSALKKMFAGEEPQPAPAPVEKKEEKQER
SPDRRKRQNNRRDRNERRDNRSESNEGREGSESRDNRDNREGRERREGRDENRRNRREKP
QQNAEEREIRQPVSEESDKGRQRDEQQPRRERNRRRNDDKRQAQQEVKALNRDEETAQDT
EQEERVQVMPRRKQRQMNQKVRFQSQAEEAAVEAIAPQAEPAQRTELAKVDLPAVIENAP
EQEENAEGRENAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLAIACASPEMASG
KAWIRYPVARPQEPQFEEQTVAQETALPVAPVEVEAIADAAAVVIPEPQVAEVETSHPEV
IAAPVTEQPQIVTPDDAVVAKQIAEDAAVAEPAVEQAAAVETTETTEAAVEPQPVVEVEV
ETEVQPEIEIDVEPVEAAEVEPEVTDVAHVDEPEVKPVPAVKPAPAAQVHAEAHHATAPM
TRAPAPEYVPEAPRQSDWVRPAFEFDGKGSAGGHSATHHATAPATRPQPAE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcccggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaacccagccttgaagccgcatttgtcgattac
ggtgccgagcgtcatggtttcctcccgctgaaagagatcgctcgcgagtacttcccttcc
aactataatgcccatggccgtcctaacatcaaagatgttctgcgcgaaggtcaggaagtt
attgtccagattgataaagaagagcgcggcaacaaaggcgctgcactgacaacctttatc
agcctggcaggcagctacctcgtgctgatgccaaacaacccgcgtgcgggaggtatctct
cgccgtatcgaaggggacgaccgtaccgaactgaaagaggcgctggcaagcctggagctg
ccagacggcatgggtctgattgtccgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacctgggcttccgtctgaagcactgggaagcgattcagaaagccgctgaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgcgac
tatctgcgtcaggacattggcgaaattctgattgataacccgaaagtgcttgagctggcc
cgccagcatatcgctgcgctgggtcgtcccgatttcaccagcaaaatcaaactgtacacc
ggtgagatcccgctgttcagccactaccagattgaatcgcagattgaatccgccttccag
cgtgaagtccgtctgccatccggtggttctatcgttatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcccgtgcaacccgcggtggcgatatcgaagagacggccttc
aacaccaacctggaagcggccgatgagattgcccgccagctgcgtctgcgtgacctgggc
ggcctgatcgttatcgacttcatcgacatgacgccggtacgtcaccagcgcgcggtggaa
aaccgcctgcgtgaagcggtgcgtcaggatcgtgcacgtatccagatcagccatatttcc
cgttttggcctgctggagatgtcccgccagcgtctgagcccgtcactgggtgaatccagc
caccacgtctgcccacgctgtagcggtaccggcaccgtgcgtgacaacgaatcgctgtcc
ctctctatcctgcgtcttatcgaagaagaggcgctgaaagagaacaccaaagaagttcac
gccattgtgcctgtgccgattgcctcctacctgctgaacgaaaaacgtgccgcggtaagt
gcgatcgaagcccgtctgggcggtgtacgctgcgtgatcgtgcctaacgatcagatgcag
accccgcactactccgtgctgcgcgtgcgcaaaggcgaagagacctccaccctgagctac
atgctgcctaagctgcatgaagaggcgatggcgctgccgtccgaggaagagtactcagag
cgtaaactgcctgaacagcctgcactggcagcgtttgtgatgccagaagcaccgcctgcg
ccagcgcaggagaccgtggcggctaaacctgcagccaaaccggcggcagaagtgagccaa
ccggctgaacagcctggtctgctgagccgcttcctcagtgcgctgaagaagatgttcgcg
ggtgaagagccgcagcctgccccggcaccggttgagaagaaagaagagaaacaggagcgt
tccccggatcgtcgtaagcgtcagaacaaccgtcgtgaccgcaatgagcgccgcgataac
cgttcagagagcaacgaaggccgtgaaggcagcgaaagccgtgacaatcgtgataaccgc
gaaggtcgcgagcgccgtgaaggacgtgacgaaaaccgtcgcaaccgccgcgagaagccg
cagcagaacgcggaagagcgtgaaattcgccagccggtcagcgaagagtctgataaaggc
agacaacgtgatgagcagcagccgcgccgcgaacgtaaccgtcgtcgtaacgatgacaaa
cgtcaggcccagcaggaagttaaagcgctgaatcgcgacgaagagaccgctcaggatact
gaacaggaagaacgcgttcaggtgatgccgcgccgtaagcagcgtcagatgaaccagaaa
gtgcgtttccagtctcaggctgaagaagctgcggttgaagcgatcgcaccacaggccgag
cctgcacagcgtaccgagctggctaaagttgatctgcctgcggtgattgaaaacgcacct
gagcaggaagaaaatgctgaaggccgtgaaaacgccggcatgccgcgccgttcacgccgc
tctccgcgtcacctgcgcgtgagtggtcagcgtcgccgtcgttatcgtgacgagcgttat
ccgctgcagtcgccaatgccgctggctattgcctgtgcctccccagaaatggcatcaggt
aaagcctggatccgttatccggtagctcgccctcaggagccacagtttgaagagcagacc
gtcgctcaggaaactgcgctccctgttgcgccagtcgaagttgaagcgatcgctgacgct
gctgccgttgtgatcccagagccgcaggtggctgaagttgaaacttcacatccggaagtg
attgctgcgccagtgacagaacagccgcagatcgtcactcctgacgatgcggtcgtcgcg
aagcagattgcagaggacgctgccgtagctgaacctgctgtcgaacaagccgctgccgtt
gaaacgactgaaaccaccgaagcagccgtcgagccgcagccggtcgtggaagttgaagta
gaaacggaagttcaacctgagattgaaatcgatgttgaaccggttgaggccgctgaagtg
gaacctgaagtcactgacgtcgctcacgtcgacgagccagaagtgaagccggttcctgca
gtgaagccagcgccagccgctcaggttcacgctgaagcccatcacgcgacggctccgatg
acccgtgcgccggcaccggaatatgttccggaagcgccgcgccagagtgactgggtacgt
ccggcatttgaatttgacggtaaaggctctgcgggggggcacagcgccacccatcacgcc
actgcgccagccacgcgcccacagccggctgaataa
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