Leifsonia sp. PS1209: HF024_00065
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Entry
HF024_00065 CDS
T06547
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HF024_00065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leif03400
]
HF024_00065
Enzymes [BR:
leif01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HF024_00065
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HF024_00065
DNA repair and recombination proteins [BR:
leif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HF024_00065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Cys_rich_KTR
DUF7573
Motif
Other DBs
NCBI-ProteinID:
QIZ97090
UniProt:
A0A6H1W0E5
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All DBs
Position
complement(11997..12860)
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AA seq
287 aa
AA seq
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MPELPEVTALAADLDARLRGRVIDSLRIVAFAALKTFDPPVSAVSGLTIGGVTRHGKFLD
ISAGDLHIVMHLARAGWVRWRDAPPPPPSGRPGKGPLAARLVLDDGTGLDITEAGTKKSL
SISVVHDPADVPGVANLGPDPLAPEFTEEVFAGILAGAGRAQIKGVLRSQSIIAGIGNAY
SDEILHTARMSPFKPASMSPEEVSRLYAAMQSTLRDALARADGLAASELKGEKKLGMQVH
GRTGQPCPVCGDTVRQVIFADSTLQYCPTCQTGGKPLADRVLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaactccccgaagtcacggccctcgcagccgacctcgacgcgcgcctccgcggc
cgtgtcatcgactcgctgcgcatcgtcgcgttcgcggcactcaagacgttcgatccgccg
gtatcggcggtcagcggcctcaccatcggcggcgtgacgaggcacggcaagttcctggac
atctccgccggcgacctgcacatcgtgatgcacctggccagggcgggctgggtccgctgg
cgggatgcgccgcctccccctccgtccggacggcccggcaagggcccgctggccgcgcgt
ctcgtcctcgacgacggcaccgggctcgacatcacggaggccggcaccaagaagagcctg
tcgatctccgtcgtccacgatccggccgatgtgcccggggtggccaatctcggccccgac
cccctcgcgccggaattcacggaggaggtcttcgcgggcatcctggccggcgccggccgc
gcccagatcaagggtgtgctgcgcagccagtcgatcatcgcgggaatcggcaacgcgtac
tcggacgagatcctgcacacggcacgcatgtcgccgttcaagccggcctcgatgtctccg
gaggaggtctcccgcctctacgccgccatgcagagcacgctccgggatgcgctcgcccgc
gccgacggcctcgccgcctccgagctcaagggcgagaagaagctcgggatgcaggtgcac
ggccgcacgggtcagccctgtccggtctgcggcgacacggtgcgccaggtgatcttcgcc
gactccacgctgcagtactgccccacctgccagaccgggggcaagccgctggccgaccgc
gtgctgtcgcggctgctcaagtga
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