KEGG   Leifsonia sp. PS1209: HF024_00065
Entry
HF024_00065       CDS       T06547                                 
Name
(GenBank) Fpg/Nei family DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
leif  Leifsonia sp. PS1209
Pathway
leif03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:leif00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HF024_00065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:leif03400]
    HF024_00065
Enzymes [BR:leif01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     HF024_00065
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     HF024_00065
DNA repair and recombination proteins [BR:leif03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     HF024_00065
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS Zn_ribbon_TFIIB Cys_rich_KTR DUF7573
Other DBs
NCBI-ProteinID: QIZ97090
UniProt: A0A6H1W0E5
LinkDB
Position
complement(11997..12860)
AA seq 287 aa
MPELPEVTALAADLDARLRGRVIDSLRIVAFAALKTFDPPVSAVSGLTIGGVTRHGKFLD
ISAGDLHIVMHLARAGWVRWRDAPPPPPSGRPGKGPLAARLVLDDGTGLDITEAGTKKSL
SISVVHDPADVPGVANLGPDPLAPEFTEEVFAGILAGAGRAQIKGVLRSQSIIAGIGNAY
SDEILHTARMSPFKPASMSPEEVSRLYAAMQSTLRDALARADGLAASELKGEKKLGMQVH
GRTGQPCPVCGDTVRQVIFADSTLQYCPTCQTGGKPLADRVLSRLLK
NT seq 864 nt   +upstreamnt  +downstreamnt
gtgcctgaactccccgaagtcacggccctcgcagccgacctcgacgcgcgcctccgcggc
cgtgtcatcgactcgctgcgcatcgtcgcgttcgcggcactcaagacgttcgatccgccg
gtatcggcggtcagcggcctcaccatcggcggcgtgacgaggcacggcaagttcctggac
atctccgccggcgacctgcacatcgtgatgcacctggccagggcgggctgggtccgctgg
cgggatgcgccgcctccccctccgtccggacggcccggcaagggcccgctggccgcgcgt
ctcgtcctcgacgacggcaccgggctcgacatcacggaggccggcaccaagaagagcctg
tcgatctccgtcgtccacgatccggccgatgtgcccggggtggccaatctcggccccgac
cccctcgcgccggaattcacggaggaggtcttcgcgggcatcctggccggcgccggccgc
gcccagatcaagggtgtgctgcgcagccagtcgatcatcgcgggaatcggcaacgcgtac
tcggacgagatcctgcacacggcacgcatgtcgccgttcaagccggcctcgatgtctccg
gaggaggtctcccgcctctacgccgccatgcagagcacgctccgggatgcgctcgcccgc
gccgacggcctcgccgcctccgagctcaagggcgagaagaagctcgggatgcaggtgcac
ggccgcacgggtcagccctgtccggtctgcggcgacacggtgcgccaggtgatcttcgcc
gactccacgctgcagtactgccccacctgccagaccgggggcaagccgctggccgaccgc
gtgctgtcgcggctgctcaagtga

DBGET integrated database retrieval system