Leifsonia sp. PS1209: HF024_09175
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Entry
HF024_09175 CDS
T06547
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF024_09175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leif03019
]
HF024_09175
03009 Ribosome biogenesis [BR:
leif03009
]
HF024_09175
Enzymes [BR:
leif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HF024_09175
Messenger RNA biogenesis [BR:
leif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HF024_09175
Ribosome biogenesis [BR:
leif03009
]
Prokaryotic type
rRNA processing factors
HF024_09175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
TrAA12
Motif
Other DBs
NCBI-ProteinID:
QIZ98655
UniProt:
A0A6H1W6F7
LinkDB
All DBs
Position
1935447..1938224
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AA seq
925 aa
AA seq
DB search
MVENENTDNTQDNGSEAGPRKRSRLFGSRKSAKKSASAVPANDSREAIASSAPTVAGHAS
TAPAVQERTPMDEKIHDNHDDIIGSGPFPAGQPAVTTEQTPDAGAAQPADAGTDSTDAAG
SAPAAPAAPDAPAAEADTALPGLPPTTLLFQAPDILPLPPLPHDEYDDDEPSTVRRRSRR
RAGEENRSGSNDPANTVVKVRAPREPELITEPQRIKGSTRLEAKKQRRRDGRDAGRRRPV
ITEAEFLARRESVDRQMIVREKGGRIQIGVLEDKVLVEHYVAKSQEASLIGNVYLGRVQN
VLPSMEAAFVDIGRGRNAVLYSGEVDWDAAETGNQPRRIELALKPGDRVLVQVTKDPVGH
KGARLTSQVSLPGRYLVYVPNGSMNGISRKLPDTERARLKKILKEVLPENTGVIVRTAAE
GATEEQLTLDVTRLTAQWADISRQVETVGAPALLHSEPDLLIKIVRDVFNEDFQKLIIAG
QDAQSTIENYLRQVAPDLLDRVEAYTGERDAFDEFRITEQIEKALDRKVWLPSGGSLVID
RTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLE
SNRDLVLRRLIECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEACAGRGVI
VHHDPVVKHRQTPQQQPQSERRRGRGGQQSGGNGSSNGNGNGNGSSNGNGNGGSNGNGGG
TPTGVTHAITDDAKNALAQIAASTLAHPHDEHQPVDAPAASAESAHGKHVAGEQEQQQDA
PKKSRRKSGKRDRVKAAEAEQAATEQPATQESAPQAEAAPVREQQQREPREPQAPAERPA
ASRESADASVPLIELPEPAAAPVTRRTPTKEAELLLDSVLDALPQPKQPGQGRGRSRRVS
TAAIVGGDTAPQITRAEIIRAEQGE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaaacgaaaatactgacaacacgcaggacaacggatcggaagcggggcccagg
aagcgatcgcgcctcttcggttccaggaagagcgccaagaagagcgcctccgccgtgcct
gcgaacgattcgcgtgaggccattgcgtcctccgcgccgacggtggccgggcatgcctcg
accgcgcccgccgtccaggagagaacacccatggacgagaagatccacgacaaccacgac
gacatcatcggctccggcccgttcccggccggacaaccggcggtgacgacggagcagact
ccggatgccggcgcggcccagcccgccgacgcggggacggacagcacggacgccgcaggc
tcagctcctgccgctcctgccgcaccggatgctcccgccgccgaggcggacacggcgctg
cccggcctcccgccgacgacactgctgttccaggccccggacatcctgccgctgcctccg
ctcccgcacgacgagtacgacgacgacgagccgagcacggtccgccgccgttcgcgccgc
cgcgccggcgaggagaaccgctctggatcgaacgacccggcgaacacggtcgtcaaggtc
cgcgccccgcgcgagccggagctcatcaccgagccgcagcgcatcaagggctcgacccgt
ctcgaggccaagaagcagcgccgccgcgacggccgggacgccggccgccgccgacccgtc
atcaccgaggccgagttcctcgcccgccgtgagtccgtcgaccgccagatgatcgtgcgc
gagaagggcggccgcatccagatcggcgtactcgaagacaaggtgctcgtcgagcactac
gtcgccaagtcgcaggaggcgtcgctgatcggcaacgtctacctgggtcgcgtgcagaac
gtgctgcccagcatggaggctgcgttcgtcgacatcggccgcggccgcaatgccgtgctg
tactccggcgaggtcgactgggatgccgcggagaccggcaaccagccgcgccgcatcgag
ctggcgctcaagccgggcgaccgcgtgctcgtccaggtcacgaaggaccccgtcgggcac
aagggcgcccgcctgaccagccaggtctcgctgcccggccgctacctcgtctacgtgccg
aacggctcgatgaacgggatcagccgcaagcttccggacaccgagcgtgcccgtctgaag
aagatcctcaaagaggtcctgccggagaacaccggcgtcatcgtgcgcaccgccgccgag
ggcgcgaccgaggagcagctgacgctcgacgtcacgcgcctcaccgcgcagtgggcggac
atcagcaggcaggtcgagaccgtcggggcgcccgcgctgctgcacagtgagcccgacctg
ctgatcaagatcgtcagggacgtcttcaacgaggacttccagaagctgatcatcgccggt
caggatgcgcagagcaccatcgagaactacctccgccaggtcgcccccgacctcctcgac
cgcgtcgaggcgtacacgggcgagcgggatgcgttcgacgagttccgcatcacggagcag
atcgagaaggcgctcgaccgcaaggtctggctgccgtccggtgggtccctggtgatcgac
cgcacagaggcgatgacggtcgtcgacgtcaacaccggcaagttcgtcggctccggcggc
aacctggaagagaccgtcaccaagaacaacctggaagcggccgaggagatcgtccgccag
ctgcgtctgcgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgag
tccaaccgcgacctcgtgctccgccgcctgatcgagtgcctgagccgcgaccgcaccaag
caccaggtggcagaggtcacctcgctcggcctcgtgcagatgacgaggaagaagctcggc
ctcggcctgctcgagacgttcagcgaggcgtgcgaggcctgtgcgggccgcggtgtcatc
gtgcaccacgacccggtcgtcaagcaccgccagaccccgcagcagcagccgcagagcgag
cgccgccgcggccgtggcggccagcagtccggtggaaacggctcgtcgaacggcaacggc
aacggcaacggatcgtcgaacggaaacggcaacggcggctcgaacgggaacggcggtggc
acccccaccggcgtgacccacgccatcaccgacgacgccaagaacgcgctggctcagatc
gcggcgagcacgctggcccacccgcacgacgagcaccagccggtggatgcgcctgccgcc
tccgcggagtccgctcacggcaagcatgtcgccggcgagcaggagcagcagcaggatgct
ccgaagaagtcccgcaggaagagcggcaagcgcgacagggtcaaggcggcggaggccgag
caggctgcgaccgagcagccagcgacgcaggagagcgccccgcaggccgaggcggcgccg
gtgcgcgagcagcagcagcgcgagccccgcgagccgcaggcgcccgctgagcgcccggca
gcgtcccgcgagagcgcggacgcgtccgtgcccctgatcgagctccctgagcccgcagcg
gctcctgtgacgcgtcgcacgcccaccaaggaggccgagctgctgctcgactccgtgctg
gacgcccttccgcagccgaagcagcccggtcagggccgcggacgcagccgcagggtgagc
acggcggcgatcgtcggtggagacaccgcgccccagatcacgcgggcagagatcatccgg
gcggagcagggcgagtag
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