Leifsonia sp. PS1209: HF024_11535
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Entry
HF024_11535 CDS
T06547
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03030
DNA replication
leif03430
Mismatch repair
leif03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF024_11535 (dnaE)
03430 Mismatch repair
HF024_11535 (dnaE)
03440 Homologous recombination
HF024_11535 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leif03032
]
HF024_11535 (dnaE)
03400 DNA repair and recombination proteins [BR:
leif03400
]
HF024_11535 (dnaE)
Enzymes [BR:
leif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF024_11535 (dnaE)
DNA replication proteins [BR:
leif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HF024_11535 (dnaE)
DNA repair and recombination proteins [BR:
leif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HF024_11535 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
QIZ99081
UniProt:
A0A6H1W875
LinkDB
All DBs
Position
complement(2417247..2420765)
Genome browser
AA seq
1172 aa
AA seq
DB search
MPTDSFVHLHVHSEYSMLDGAARIKPLVDAAVEQGMPAVAVTDHGNMFGAFDFWRTATEA
GIKPIIGTEAYLTPGTHRTDRTRIRWGDGGGDDVSGSGAYTHMTMFAATTEGMHNLFRMS
SLASTEGYYFKPRMDRELLNRYSKGIIATTGCPSGEVQTRLRLGQYDEAKKAAAEFRDIF
GKENFFAEIMDHGLGIERRIMADLIRLAKELDIPLVATNDLHYTHAADAKSHAALLCVQS
GSTLDDPNRFKFDADEFYLKSAEEMRQLFRDHPEACDNTLAIAERCDVKFDTSANYMPRF
PVPEGETEQSWFVKEVEKGLHERYPEGITEEVRKQADYEIGVISQMGFPGYFLVVADFIN
WSKRNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDDR
RRGEVIKYVTEKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGDKLTKAMPPPVMG
KDIPLTGIFDKNHPRYKEAVDIRAVVESDPEAKTVFDTALGLENLKRQWGVHAAGVIMSS
DPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIEANRGEK
LVLEDLELDDRGAYDLLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISALIALYRPGPM
GANSHTNYALRKNGLQEITPIHPELAEPLAEILSTSYGLIIYQEQVMAIAQKVAGFSLGQ
ADILRRAMGKKKKSELDKQFEGFAGGMRDNGFSMDAVNKLWEILLPFSDYAFNKAHSAAY
GVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESNLYFA
AVGTDIRFGMGAVRNVGANVVEGVREARETKGRFDSFHDFLTKVPIHAANKRTVESLIKA
GAFDSLGHTRRALVEVHEDAVESAVKIKRNEANGDVGFDFDSLWGEDEQTASQHHIPDRP
EWGKRDKLAFERDMLGLYVSDHPLAGLELPLAKLASTSIADLVGSDNIQDGETVTIAGLV
TSVQHRVAKASGNQYGMIQVEDFGGELTVMFMGKAYQEFSPMLQGDAIVVVRGRVSLRDD
GMNLHAFSLMTPDLGQSVGTGPLMITMPDQRATTDTVTTLAEVLARHPGDNEVRLRLVKG
QVARVFEVPKPVTISADLYGELKGLLGPNCLV
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaccgactccttcgtccatctccacgtccacagcgagtactcgatgctcgacggt
gccgcgcgcatcaaaccgctcgtcgacgccgccgtcgagcagggcatgcccgccgtcgcc
gtcaccgaccacggcaacatgttcggcgccttcgacttctggcgcaccgccaccgaggcc
ggcatcaagccgatcatcggcacggaggcgtacctcacgccgggcacgcaccgcaccgac
cgcacccgcatccggtggggagacggtggcggcgacgacgtctccggctccggcgcgtac
acgcacatgacgatgttcgcggccaccacggaggggatgcacaacctcttccggatgtcg
tcgctcgcctccacggagggctactacttcaagccccgcatggacagggagctgctgaac
cgctactccaagggcatcatcgccaccacgggctgcccgtccggcgaggtgcagaccagg
ctgcggctcggccagtacgacgaggcgaagaaggcggccgccgagttccgcgacatcttc
ggcaaggagaacttcttcgccgagatcatggatcacggtctcggcatcgagcgccgcatc
atggccgacctcatccggctggcgaaggaactggacatcccgctcgtcgccaccaacgac
ctgcactacacgcacgccgccgacgcgaagagccacgccgcgctgctctgcgtgcagtcc
ggctcgacgctcgacgaccccaaccggttcaagttcgacgccgacgagttctacctcaag
agcgcggaagagatgcgtcagctgttccgcgaccaccccgaggcctgcgacaacacgctc
gccatcgcagagcgctgcgacgtgaagttcgacacctccgccaactacatgccgcgcttc
ccggtgccggagggcgagacggagcagagctggttcgtcaaggaggtcgagaaggggctg
cacgagcgctaccccgaaggcatcaccgaggaggtccgcaagcaggcggactacgagatc
ggcgtcatctcgcagatgggcttccccggatacttcctggtggtcgccgacttcatcaac
tggtcgaagcgcaacggcatcagggtcggccccggccgtggctccggtgcaggctcgatg
gcggcgtacgccatgcgcatcaccgacctcgacccgctgcgccacggactgatcttcgag
cgcttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgacttcgacgaccgg
cgccgtggcgaggtgatcaagtacgtcacggagaagtacggcgaggagcgcgtcgcccag
atcgtcacgtacggcaccatcaaggccaagcaggctctgaaggactcctcgcgcgtgctc
ggcttcccgttcgggatgggcgacaagctcaccaaggcgatgccgccgcccgtgatgggc
aaggacatcccgctcaccgggatcttcgacaagaaccacccgcgctacaaggaggcggtg
gacatccgggcggtcgtggagagcgacccggaggccaagaccgtcttcgacacggccctg
gggctggagaacctgaagcgccagtggggtgtgcatgcggcgggcgtcatcatgtcgtcc
gacccgctgatcgacatcatcccgatcatgaagcgcgagcaggacggccagatcgtcacg
cagttcgactatccggcgtgcgagtcgctcgggctgatcaagatggacttcctggggttg
cgcaacctcacgatcatcaacgacgccctcgacaacatcgaggccaaccgcggagagaag
ctcgtcctcgaagacctcgagctcgacgaccgcggcgcgtacgacctgctctcccgcgga
gacacgctcggcgtgttccagctcgacggcggcccgatgcgctccctgctccggctgatg
aagccggacaacttcgaggacatctcggcgctcatcgccctgtatcgtcctggtccgatg
ggcgcgaactcgcacacgaactacgcgctgcgcaagaacggtctgcaggagatcacgccg
atccatcccgagctggccgaaccgctcgccgagatcctgtccaccagctacggcctcatc
atctaccaggaacaggtgatggcgatcgcacagaaggtcgccggcttctcgctcggccag
gcggacatcctgcgccgcgcgatgggcaagaagaagaagtcggagctggacaagcagttc
gagggcttcgcgggcggtatgcgcgacaacgggttctcgatggatgcggtcaacaagctc
tgggagatcctgctccctttctccgactacgcgttcaacaaagcgcactccgccgcgtac
ggcgtcatctcgtactggaccgcctacctcaaggcccactacccggccgagtacatggcc
gcgctgctgacgagcgtcggagactccaaagacaagatggcgctctacctcaacgagtgc
cgccgtatgggcatcaaggtgctcccgccggacgtcaacgagtccaacctctacttcgcc
gccgtcggcaccgacatccgcttcgggatgggcgccgtgcgcaacgtgggcgcgaacgtc
gtcgagggcgtgcgggaggcgcgtgagaccaagggcaggttcgactccttccacgacttc
ctcaccaaggtgccgatccacgcggccaacaagcgcacggtggagtcgctgatcaaggcc
ggcgcgttcgactcgctcggccacaccaggcgcgcgctcgtcgaggtgcacgaggacgcg
gtcgagtccgcggtgaagatcaagcgcaacgaggcgaacggcgatgtcggcttcgacttc
gacagcctctggggcgaggacgagcagacggcgtcgcagcaccacatcccggatcggccg
gagtggggcaagcgcgacaagctggcgttcgagcgcgacatgctcgggctgtacgtctcc
gaccatccactggccgggctggaactgccgcttgccaagctggcgagcacgtcgatcgcc
gacctcgtcggctccgacaacatccaggacggcgagacggtcacgatcgccggtctcgtc
acgagcgtgcagcaccgcgtggcgaaggcctccggcaaccagtacgggatgatccaggtc
gaggacttcggcggcgagctgaccgtgatgttcatgggcaaggcgtaccaggagttctcg
ccgatgctgcagggcgacgcgatcgtcgtggtgcgcggcagggtcagcctccgcgacgac
gggatgaacctgcacgcgttcagcctgatgacgcccgatctcggtcagagcgtcggcacg
gggcccctcatgatcacgatgccggatcagcgggccacgacggacacggtcaccaccctc
gccgaggtgctcgccaggcacccgggcgacaacgaggtgcgcctgcgcctcgtgaagggc
caggtcgcgcgcgtcttcgaggtccccaagccggtcaccatcagcgccgacctctacggc
gagctgaagggcctcctcggccccaactgcctcgtctag
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