Leifsonia sp. PS1209: HF024_13095
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Entry
HF024_13095 CDS
T06547
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
leif
Leifsonia sp. PS1209
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leif03019
]
HF024_13095 (hrpA)
Enzymes [BR:
leif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HF024_13095 (hrpA)
Messenger RNA biogenesis [BR:
leif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HF024_13095 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
T2SSE
SLFN-g3_helicase
HA2_N
nSTAND3
NACHT
ResIII
PhoH
Zeta_toxin
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QIZ99355
UniProt:
A0A6H1W8F0
LinkDB
All DBs
Position
2753683..2757531
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AA seq
1282 aa
AA seq
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MSPTITFPPELPVSQKRDEIARAIRDNQVIIVAGETGSGKTTQLPKICLELGRTNIGHTQ
PRRLAARTIAERIAEELGEDVGATVGYQVRFTDRVSSDTRIKLMTDGILLNEIHRDRMIR
KYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDPESFAAHFASADGTPA
PIVEVSGRTYPVEVRYRPLVADALSDDDDEDVDPVPSADRDYLQGINDALDELAREAPGD
VLVFLSGENEIRDAADAVRGRNLPGTEVLPLYGRLSSAEQHRVFQPSSMPGIRRRVVLAT
NVAETSLTVPGIKYVVDAGTARISRYSVRAKVQRLPIEAISQASANQRSGRSGRTSDGIA
IRLYSQEDFEKRPEFTEPEVLRTNLAAVILQMISLGLGDIAAFPFLTPPDSRGIKDGLDL
LAELGAVVKTKDGENALTKVGRNLAQLPIDPRFARMVVESKRHNTSREVMAIVAGLTIQD
PRERPVERRGTADEQHARFADPTSDFLTLLNLWNYLEEKQKELSSSAFRRMCKAEFLNFL
RVREWQDVYRQLRQLAKPLGLTMGQPSVNPDGIHKSLLAGLLSHIGLKDLTASGNKGGAR
GARSAEYLGARQTRFVIFPGSTLAKKQPNALMSAELVETSRLFARMNAAIDPAWAEPIAG
DLCKRSYSEPHWEKNQGAVVAYERVTLYGVPIIPRRRVQYARIDQELSRELFIRHALVEG
EWDSKQAFDRANTKLRAELRELEERTRRRDILNDDEAVFEFYDARIPADVVSTRSFEGWW
RKARNDTPDLLTMTQDALLDADSAPVDDDAFPPVWRQGDQQLTLRYRFEPGAEDDGVTVQ
VPLPLLAGLLADGFDWQVPGLRHDLVTAMIKALPKAIRRQVVPAADWATRLLGELSGTAG
MHAHDGEKPAASLADTLAATISRMTGSRVSGSDFERERIPAHLSPTFQVVGERGRPIASG
KDLAVLQDRLRSRARDSVARVAEARTPNAIERSGLTTWDIDELPRFLDSTQEGPGGSKNV
IRAYPALVDDGDSVSIRLMGTPADQAKAMPGGVRRLLLASIPSPVAYVQQHLTSNEKLTL
AASPYPNTKALFDDCLLAVIDSVLYRMKPDGQVFMRAEFEAVRDRVSAIVMDSMFTTVAL
VTRILTAARAAEKAIGGATSLVFLSALNDAKAQLAGLVYPGFVSATGLDQLQHLPRYLNG
ISQRIAALPVNPGRDRAWQTQVETAVALYTEAGGRIPPAPDAPANVVHARWMLEEFRVSL
FAQSLGTAESVSLQRIRKVLGG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccacgatcaccttccctcccgagctgccggtcagtcagaaacgggatgagatc
gcccgcgccatccgcgacaaccaggtcatcatcgtggccggtgagaccgggtcgggcaag
accacgcagctgccgaagatctgcctggagctcgggcgcacgaacatcggccatacgcag
ccgcgccgcctcgccgcccgcaccatcgcggagcgcatcgccgaggagctcggcgaggac
gtcggcgcgaccgtcggataccaagtgcggttcaccgaccgcgtctcctccgacacccgc
atcaagctgatgacggacggcatcctgctcaacgagatccaccgcgacaggatgatccgc
aagtacgacacgatcatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcctg
ctcggctatctgaagcagctgcttccgaagcgtcccgacctcaaggtcatcatcacgtcg
gcgaccatcgatccggagagcttcgccgcgcacttcgcctcggcggacggcaccccggcc
ccgatcgtcgaggtctccggacgcacctatccggtggaggtccgctaccggccgctcgtc
gccgacgcgctcagcgacgacgacgacgaggacgtcgaccccgtcccctccgccgaccgc
gactacctgcagggcatcaacgacgccctcgacgagctcgcccgcgaggccccgggcgac
gtgctggtattcctctccggcgagaacgagatccgggatgcggcggacgccgtgcgcgga
cgcaacctgccgggcaccgaggtcctcccgctctacggccgcctgtcgtccgccgagcag
caccgcgtgttccagccgtccagcatgccgggcatccggcgcagggtcgtgctcgccacc
aacgtcgcggagaccagcctcaccgtgccgggcatcaagtacgtggtggacgccggaacg
gcccgcatcagccggtacagcgtccgcgccaaggtgcagcgcctcccgatcgaggccatc
tcgcaggcgagcgccaaccagcgctccgggcgttccggccgcaccagcgacggcatcgcc
atccggctgtactcgcaggaggacttcgagaagcgccccgagttcaccgagccggaggtg
ctgcgcaccaacctggccgccgtcatcctgcagatgatctcgctgggcctcggtgacatc
gccgctttcccgttcctcaccccgccggactcgcgcgggatcaaggacggtctcgacctg
ctggcggagctgggcgccgtggtgaagaccaaggacggcgagaacgcgctgacgaaggtc
ggccgcaacctcgcgcagctgcccatcgacccccgcttcgcccggatggtcgtggagtcc
aagcggcacaacacctcccgcgaggtgatggccatcgtcgcagggctcaccatccaggac
ccgcgcgaacgcccggtggagcgccggggcaccgccgacgagcagcatgcccgcttcgcc
gacccgaccagcgacttcctcaccctgctcaacctctggaactacctggaggagaagcag
aaggaactgtcgtcgagcgcgttccgccggatgtgcaaggccgagttcctcaacttcctg
cgggtgcgcgagtggcaggacgtgtaccggcagctgcgtcagctggccaaaccgctcggt
ctcacgatgggtcagccgtccgtcaacccggatggcatccacaagtcgctgctcgccggt
ctgctctcgcacatcgggctcaaagacctcacggcgtcaggcaacaagggcggcgcgcgc
ggcgcccgatcggccgagtatctcggcgcccgccagacccggttcgtgatcttccccggc
tcgacgctcgccaagaagcagccgaacgccctgatgagcgctgagctcgtggagacgagc
cgcctgttcgccaggatgaacgcggccatcgaccccgcctgggccgagccgatcgccgga
gacctctgcaagcgcagctacagcgagccgcactgggagaagaaccagggcgccgtcgtc
gcctacgagcgggtcaccctgtacggcgtgccgatcatcccgcgccgccgggtgcagtat
gcgcgcatcgaccaggagctgtcccgcgagctgttcatccggcacgccctggtggagggc
gagtgggactcgaagcaggcgttcgaccgtgccaacaccaagctgcgggccgagctgcgc
gagctggaggagcgcacccggcgccgcgacatcctcaacgacgacgaggccgtgttcgag
ttctacgacgcgcgcatcccggccgatgtcgtctcgacccgctcgttcgaaggctggtgg
aggaaggccaggaacgacacccccgacctgctgacgatgacgcaggatgcgctgctggat
gcggactccgccccggtcgacgacgacgcgttccctccggtgtggcgccagggcgaccag
cagctgaccctccgctaccgcttcgaaccgggagcggaggacgacggcgtgaccgtgcag
gtgccgctcccgctgctcgccggcctcctggcggacggcttcgactggcaggtgcccggc
ctccgccacgacctggtcacggccatgatcaaggcgctgccgaaggcgatccgccgacag
gtggtccccgccgccgactgggcgacccggctgctcggcgagctgagcggcacagcagga
atgcacgcccacgacggcgagaagcccgccgcctccctcgccgacaccctcgcggccacg
atcagcaggatgaccgggtcccgggtgagcggctccgacttcgagcgggagcgcatcccg
gcccacctgtctcccacgttccaggtggtcggcgaacgcggccgcccgatcgcctccggc
aaagacctcgcggtgctgcaggacaggctgaggtcccgcgccagggactcggtggcccgc
gtcgccgaggcgcgcaccccgaacgcgatcgagcgctccggcctcaccacctgggacatc
gacgagctcccccgcttcctcgacagcacccaggagggtccaggcggctcgaagaacgtg
atcagggcgtacccggcgctcgtcgacgacggcgacagcgtgagcatccggctgatgggc
accccggccgaccaggcgaaggcgatgcccggcggcgtgcgtcgcctgctgctggcgagc
atcccgtcgccggtggcgtacgtgcagcagcacctcacctcgaacgagaagctgacgctg
gcggcgagcccgtacccgaacacgaaggcgctgttcgacgactgcctgctggccgtgatc
gacagcgtgctgtaccggatgaagccggacggccaggtgttcatgcgcgccgagttcgag
gcggtccgcgaccgcgtctccgccatcgtcatggactcgatgttcacgacggtggcgctg
gtcacccgcatcctgaccgccgcccgtgcagcggagaaggcgatcgggggtgccaccagc
ctggtgttcctgtccgccctcaacgacgcgaaggcacagctcgccggactcgtctacccg
gggttcgtctccgcgaccggcctcgaccagctgcagcacctgccccgctacctgaacggc
atcagccagcgcatcgccgccctgccggtgaacccaggccgcgaccgcgcctggcagacg
caggtggaaaccgccgtcgccctctacaccgaggcgggcggccgcatcccgccggcgccg
gacgcccccgccaacgtcgtccacgcccgctggatgctcgaagagttccgcgtctccctc
ttcgcccagtcgctcggcaccgccgagtccgtctccctccagcgcatccgcaaggtcctc
ggcggctga
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