Leifsonia sp. PS1209: HF024_15060
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Entry
HF024_15060 CDS
T06547
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF024_15060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leif03021
]
HF024_15060
03400 DNA repair and recombination proteins [BR:
leif03400
]
HF024_15060
Enzymes [BR:
leif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF024_15060
Transcription machinery [BR:
leif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF024_15060
DNA repair and recombination proteins [BR:
leif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF024_15060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIZ99698
LinkDB
All DBs
Position
complement(3157156..3161031)
Genome browser
AA seq
1291 aa
AA seq
DB search
MIDATTFDELRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIEVDEEGRHADMPGLENELRLEIKTLSDQRDSRIADRLQRLETD
LAALEEEGAKADQKRRVKDTAEKEMGQIRKSYDEDIARLERVWESFRTLKVGDLKPEDAD
FNELVDRFGLYFEAYMGAEAIKRRLLAFDLAAEAELLRDQIANGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVREGAEGEGR
AFSSVSEAILAKDQGSLHLNAKVKIRLEDYVPSDANETGTEGVTAIVETTLGRALFNEAL
PADYPFVDEVADKGVISSIVNALAERYPKVEVAAALDRIKDAGFYWATRSGVTVSLSDIL
TPPNKPQIVAGYEKKAAKVTAEFEKGLTTDLERRQELVKIWTEATNEVAEAMRANFPADN
TINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLDLPIAEAGADGVLVRDANVE
NSVFARTLAADAVSPEGTVVAKAGDDVGDVLIDKLVAAGVTDIKVRSVLTCESAVGVCAA
CYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEAAGRITIEDTERSRKVILTPDNGDEPHVYPVLKRSTLLVEDGQHVEL
GTQIIVGAVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VEHGDTDLLPGELVDRSKYNEVNRATLTEGKKTASARQEVMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLIGLKENVIIGKLIPAGTGLARYRNVTVEATEEAKAERYPNRI
FADDSAFSENDLSFVDFDSFSSDDYTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgcaacaacgttcgatgaactgcgtatcggcctggccactgctgacgacatc
cgtcgttggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcgggccgagccgtgactgggagtgc
tcgtgcggtaagtacaagcgcgtgcgcttcaagggcatcgtctgtgagcgctgtggcgtg
gaggtcaccaagtcctccgtccgccgcgagcgcatgggccacatcgagctcgctgctccc
gtgacccacatctggtacttcaagggtgttccctcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcatacatggtgatcgaggtcgac
gaagagggccgtcacgccgacatgcccggccttgagaacgagctccgtctcgagatcaag
accctgtccgaccagcgcgacagccgcatcgcggaccgtctgcagcgcctggagaccgac
ctcgccgcactggaggaggaaggcgccaaggccgaccagaagcgtcgcgtcaaggacacg
gccgagaaggaaatgggccagatccgcaagtcctacgacgaggacatcgcccgtctcgag
cgtgtgtgggagtccttccgcaccctcaaggtcggcgacctcaagccggaggacgcggac
ttcaacgagctggtcgaccgcttcgggctgtacttcgaggcgtacatgggagccgaggcg
atcaagcgtcgcctgctcgcgttcgacctggccgctgaggccgagctgctccgcgaccag
atcgcgaacggcaagggacagaagaagatccgcgcgatcaagcgtctgcgcgtcgtctcc
tcgttcctcgccacgggcaactcgcctgctgcgatggtcctggatgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgtcgtctgctcgacctc
ggggctcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggccgccgcggtcgtcccgtcaccggcaccggcaaccgtgccctcaag
tccctcagcgacatgctgaagggcaagcagggtcgtttccgtcagaacctgctcggaaag
cgcgtcgactactccggccgttcggtcatcatcgtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggcggccaagcgcatggtcgagcgttcgcgt
ccgcaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcacccaccctgcaccgtctcggcatccaggcgttcgagcctcagctcgtcgagggcaag
gccatccagctgcacccgctcgtgtgtgccgcgttcaacgcggacttcgacggcgaccag
atggctgtccacctgccgctgtcggtcgaggctcaggccgaggcccgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgtccggtcaccctgccctcgcaggac
atgatcatcggtctgcaccacctcaccaccgtgcgcgaaggcgccgagggcgaggggcgc
gcgttctcgtcggtctccgaggcgatcctcgccaaggaccagggttcgctgcacctcaac
gccaaggtcaagatccgtctcgaggactacgtgccctccgacgcgaacgagaccggcacc
gagggtgtcaccgccatcgtcgagacgaccctcggccgcgccctcttcaacgaggcgctg
ccggcggactacccgttcgtcgacgaggtcgctgacaagggcgtgatctcctcgatcgtc
aacgccctcgcggagcgctacccgaaggtggaggtcgcagcagcactggaccgcatcaag
gacgccggtttctactgggccacccggtccggtgtgacggtgtcgctgagcgacatcctg
acgccgccgaacaagccgcagatcgttgccggctacgagaagaaggccgccaaggtcact
gccgagttcgagaagggtctcacgaccgacctcgagcgtcgtcaggaactggtgaagatc
tggaccgaagcgaccaacgaggtcgcagaggccatgcgcgccaacttcccagcggacaac
accatcaaccgcatggtcacctccggtgcccgtggtaactggctgcaggtgcgcaacatc
gccggtatgcgtggtctggtgaacaacccgaagggtgagatcatcccccgtccgatcatt
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgcgacgcacggtgcccgt
aagggtctggccgacacggctctccgtacggcggactcgggctacctgacgcgtcgtctg
gtggacgtgtcgcaggacgtcatcatccgtgaggacgactgtggcacgaccaagggtctc
gaccttccgatcgccgaggccggcgccgacggcgtgctggtgcgcgacgcgaacgtggag
aactcggtgttcgcccgtaccctcgccgccgacgctgtctcgccggagggaaccgtcgtg
gcgaaggccggtgacgacgtcggagacgtcctcatcgacaagctggtcgccgccggtgtc
accgacatcaaggtgcgctccgtgctcacctgtgagtcggccgtcggtgtgtgtgcggcc
tgctacggccgctcgctcgcgaccggaaagctcgtcgacatcggagaggccgtcggcatc
atcgcggcccagtcgatcggtgagccgggaacccagctgaccatgcgtacgttccacacc
ggtggttccgcatccgctgacgacatcacgcagggtcttccccgcgtgcaggagctgttc
gaagctcgtacccccaagggtgcttccccgatcgccgaggcagcaggacgcatcaccatc
gaggacacggagcgcagccgcaaggtcatcctgaccccggacaacggcgacgagccgcac
gtctacccggtgctcaagcgttcgaccctcctcgtcgaggacggccagcacgtcgagctc
ggaacgcagatcatcgtcggcgccgtcgacccgaaggaagttcttcgcgtcaagggtgtc
cgtgaggtgcagaagcacctcgtcggtggtgtgcagggcgtctaccgctcgcagggtgtt
ccgatccacgacaagcacatcgaggtcatcgtccgccagatgctgcgcaaggtcaccgtc
gtcgagcacggcgacaccgacctgctgcccggcgagctggtcgaccgctcgaagtacaac
gaggtcaaccgcgccactctcaccgagggcaagaagaccgcgtcggctcgccaggaggtc
atgggtatcaccaaggcttccctcgcgaccgagtcgtggctgtcggccgcgtccttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagtccgacccgctgatcggc
ctcaaggagaacgtcatcatcggaaagctgatcccggccggtaccggcctggctcgctac
cgcaacgtgacggtcgaggccacggaagaggcgaaggcggagcggtaccccaaccgcatc
ttcgccgacgactcggccttcagcgagaacgacctgagcttcgtcgacttcgacagcttc
agctcggacgactacaccccgggaacgtacaactaa
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