Leifsonia sp. PS1209: HF024_15065
Help
Entry
HF024_15065 CDS
T06547
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF024_15065 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leif03021
]
HF024_15065 (rpoB)
03400 DNA repair and recombination proteins [BR:
leif03400
]
HF024_15065 (rpoB)
Enzymes [BR:
leif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF024_15065 (rpoB)
Transcription machinery [BR:
leif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF024_15065 (rpoB)
DNA repair and recombination proteins [BR:
leif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF024_15065 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QIZ99699
LinkDB
All DBs
Position
complement(3161076..3164573)
Genome browser
AA seq
1165 aa
AA seq
DB search
MAAARNATNTDKTPKNGRNASRLSFAKITDTLTVPDLLALQTESFDWLVGNDAWKARVAE
AQEQGRQDLPSNTGLEEIFEEISPIEDLGETMQLSFTNPFLEEKKYSIDECKEKGKTYSA
PLYVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFVINGTERVVVSQLVRSPGVYFERTP
EKTSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILSE
FAGYQSIELTLEKDAILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKV
GRYKINRKLGLDAPLSDSVLTVQDILATIKYLVALHDGRTTFNGVRNGEPVEIRLDVDDI
DHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEF
FGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLASFARINSFGFIETPYRKVVGGKVTDQIDYLTASEEDDYIVAQANAPLTA
DSHFAEDRVLARQKGGEVDLIPADEIGYMDVSPRQMVSVATSLIPFLEHDDANRALMGAN
MQRQAVPLVRSESPLVGTGMEGYAAIDAGDVLINDKAGVVSEVSADAVTIQLDEGGTKTY
YLRKFDRSNQGTSYNHRVIVSEGDRIEAGEVIADGPATENGELALGKNLLVAFMPWEGHN
YEDAIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLADLDERGII
RIGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIGV
KVFDSQDGDDELGSGVNQRVVVYIAQKRKITAGDKLAGRHGNKGVISKILPVEDMPFLAD
GTPVDVILNPLGVPGRMNFGQVLEIHLGWIAKNGWEVKGKPKWAAELPEAAFSAAPNTKV
ATPVFDGAKEEEIAGLLDSTTVTRDGDRLIGGSGKTQLFDGRSGEPYPDPVSVGYMYILK
LHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIK
SDDILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQQVSLRDADD
EAFRAAEELGINISSRFESSSIDEI
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaaccaacactgacaagacacccaagaacggacgaaacgca
tctcgtctctcgttcgcaaagatcactgacaccctcaccgttccggatctgctcgcactg
cagaccgagagcttcgactggctggtcggaaacgacgcgtggaaggctcgcgtcgccgaa
gcccaggagcagggtcgacaggatctgccgagcaacaccggtctcgaggagatcttcgag
gagatctctcccatcgaagacctcggtgagacgatgcagctctccttcaccaaccccttc
ctcgaagagaagaagtactcgatcgacgagtgcaaggagaagggtaagacctactccgct
cctctctacgtcgaagccgagttcatgaatcacctcaccggtgagatcaagacgcagacc
gtcttcatgggcgacttccccctgatgaccgagaagggcaccttcgtcatcaacggcacc
gagcgtgtcgtcgtgtcgcagctcgtccgcagccccggcgtctacttcgagcgcacgcca
gagaagacgtccgacaaggacatctactctgcacgcgtcatcccgagccgtggtgcatgg
ctcgagttcgagatcgacaagcgcgaccaggtcggtgtccgcatcgaccgcaagcgcaag
cagtcggtcacggtgttcctcaaggccctcggcctcacctccgaggagatcctctcggag
ttcgccgggtaccagtcgatcgagctcacgctcgagaaggacgccatcctcaccaaggag
gaggcgctcaaggacatctaccgcaagctgcgtccgggcgagcaggtcgctgccgaggct
gcgcgtgcgctcctcgacaacttctacttcaacccgaagcgctacgacctcgcgaaggtc
ggccgttacaagatcaaccgcaagctcgggctcgacgccccgctcagcgactccgtgctc
accgtccaggacatcctggccacgatcaagtacctcgtcgcgctgcacgacggccgcacc
accttcaacggcgtccgcaacggtgagccggtcgagatccgtctcgacgtcgacgacatc
gaccacttcggcaaccgtcgcatccgcgccgtcggcgagctcatccagaaccaggtccgc
acgggtctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgag
gccatcacgccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttc
ttcggaacgagccagctgtcgcagttcatggaccagaacaacccgctcgcgggtctgacc
cacaagcgccgcctctcggccctcggccccggtggtctgagccgcgagcgcgccggcgtc
gaggtccgtgacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaa
ggcccgaacatcggcctgatcggttcgctcgcatcgttcgcgcggatcaactcgttcggt
ttcatcgagacgccgtaccgcaaggtcgtcggcggcaaagtcaccgaccagatcgactac
ctcacggcgagcgaggaggacgactacatcgtcgcccaggccaacgctccgctgaccgct
gacagccacttcgcggaagaccgcgtcctggcacgtcagaagggtggagaggtcgacctg
atccccgcagacgagatcggctacatggatgtgtcgccgcgccagatggtttctgtcgcg
acctcgctcatcccgttcctcgagcacgacgacgcgaaccgcgccctcatgggtgcgaac
atgcagcgtcaggctgtgccgctcgtccgttcggagagcccgctcgtcggaaccggtatg
gagggctacgcggccatcgacgccggtgacgtgctcatcaacgacaaggccggagtcgtg
tcggaggtgtcggctgacgccgtcaccatccagctcgacgagggcggcacgaagacctac
tacctgcgcaagttcgaccgctccaaccagggcacgtcgtacaaccaccgcgtcatcgtc
tccgagggcgacaggatcgaagcaggcgaggtcatcgccgacggcccagccaccgagaac
ggtgagctggcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggtcacaac
tacgaggacgcgatcatcctgagccagaacctggtgaaggacgacaccctctcctcgatc
cacatcgaggagtacgaggtcgacgcccgcgacaccaagctgggcaaggaagagatcacc
cgcgacctgccgaacgtcagcccggacctcctggccgacctcgacgagcgcggcatcatc
cgcatcggcgccgaggttcgtcccggcgacatcctggtcggaaaggtcacgccgaagggc
gagaccgagctctcggccgaggagcgtctgctccgcgcgatcttcaacgagaagagccgc
gaggtgcgcgacacctcgctcaaggttccccacggtgaagagggcacgatcatcggtgtc
aaggtcttcgactcgcaggacggcgacgacgagctcggctccggcgtcaaccagcgtgtc
gtggtctacatcgcccagaagcgcaagatcaccgctggtgacaagctcgccggccgtcac
ggcaacaagggtgtcatctccaagatcctgccggtcgaggacatgccgttcctcgcggac
ggaaccccggtcgacgtcatcctcaacccgctgggtgtccccggtcgaatgaacttcggt
caggtcctcgagatccacctcggctggatcgcgaagaacggctgggaggtcaagggcaag
ccgaagtgggctgcagagctccctgaggctgcgttctccgccgccccgaacaccaaggtc
gccaccccggtgttcgacggtgccaaggaggaggagatcgccggtctgctcgactcgacc
accgtcacccgtgacggcgaccggctcatcggcggctccggcaagacccagctgttcgac
ggccgctccggcgagccgtaccctgaccccgtttcggtcggctacatgtacatcctgaag
ctgcaccacctggtcgacgacaagatccacgcgcgttcgaccggaccgtactcgatgatc
acccagcagccgctcggtggtaaggcgcagttcggtggacagcgattcggtgagatggag
gtgtgggcgctcgaggcatacggtgccgcgtacgccctgcaggagctcctgaccatcaag
tcggatgacatcctcggtcgcgtcaaggtctacgaggcaatcgtcaagggcgagaacatc
caggagccgggcatcccggagtccttcaaggtcctcatcaaggagatgcagtcgctgtgc
ctgaacgtcgaggtgctctcggccgacggtcagcaggtcagcctgcgcgacgcggacgac
gaagcgttccgcgctgcggaagagctcggcatcaacatctcctcgcgcttcgagtcgtcg
tcgatcgacgagatctaa
DBGET
integrated database retrieval system
