Leisingera sp. M523: K3557_09040
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Entry
K3557_09040 CDS
T10661
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leim Leisingera sp. M523
Pathway
leim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3557_09040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leim03400
]
K3557_09040 (mfd)
Enzymes [BR:
leim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3557_09040 (mfd)
DNA repair and recombination proteins [BR:
leim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3557_09040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
MFD_D3
Cas3-like_C_2
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UWQ30651
LinkDB
All DBs
Position
complement(1838575..1842039)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAQRAITMGGAPEGFDARLILKEVQKSGAPVLHVARDDKRMEAMRSALAFFAPQMPVFVF
PGWDCLPYDRVSPNADISAARMATLAALVHQMPKQFVLLTTLNAASQRLPARDVLREAAF
TARVDHRIDEGALRNFLVRMGFTQSPTVMEPGDYAVRGGIIDIFPPGESGPVRLDLFGDV
LDGARRFDPASQRTTEKLEVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGIEHWLPFFHEKLETLFDYLPQATVTLDDQVTPARLARWDTIEDQFETRKHAM
AQKGRIDTVYKPTPPGLLYLDDAAWEAASAEHRVVQLHPLPQASGPGTVDAGGRIGRNFA
PERQQESISLFGALASHIKARMQEGPVLIASYSEGARERLTGLIEDEGLAEAIPVTDGTR
IGKSGLHLAVWALEHGFQAPDMTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDL
VVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEASKLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPHAWEEFSARFPYQETDDQ
LRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMTGLQVAVVAPTTLLARQH
AASFAERFRGFPLQVRQLSRFVSTKEASQTREGLAKGTVDIVVGTHAVLAKNIRFQNLGL
LIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDTVTIREALLREHYRGGQSFYVVPRITDLPDVEAFLQAQLPELTYVVAHGQM
AAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTLASQDLDLRGAGNLLGDEQSG
QMRDVGYELYQSMLEEAIAKIKAGEMEGLSDADAQWAPQINLGVPVLIPEDYVPDLDVRL
GLYRRLSSLSTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKGMCKRAGIAKMDGGPKG
ATIQFHNDKFASPQGLVEFIQGQNGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAEK
VVAEKKKAKAKAKA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcgtgcaatcaccatgggcggcgcgcccgaagggtttgatgcccggctgatc
ctgaaggaagtgcaaaaatccggcgcgccggttctgcatgttgcgcgtgacgacaagcgg
atggaggcaatgcggtcggcacttgccttttttgcgccgcagatgccggtgtttgtcttt
ccgggctgggattgcctgccttatgaccgggtgtcgccgaacgccgatatctcggctgcg
cggatggccacgctggcggccctggtgcatcagatgcccaagcagtttgtgctgctgacc
acattgaatgccgccagccagcggttgcctgcgcgcgatgtgctgcgcgaggcggccttt
accgcccgtgtcgatcaccggattgacgaaggcgcgctgcgcaatttcctggtgcggatg
gggttcacccaaagcccgacggtgatggagccgggcgactatgcggtgcgcggcgggatc
atcgatatcttcccgccgggcgaaagcggcccggtgcggctggatctgttcggcgatgtg
ctggatggcgcacggcggttcgatccggcctcgcagcgcactaccgagaaactggaggtg
gtggagctggcgccggtgtccgaagtgatcctggacgaggcagcaatcacccggttccgt
cagaactaccggatcgaattcggcgccgccggtacggatgatccgctgtacgaggcggtg
agtgcagggcgcaagcatcaggggattgagcattggctgccgttcttccatgaaaagctg
gaaaccctgttcgactatctgccgcaggcaacggtgacactggatgatcaggtgacacca
gcacggctggcgcgctgggacaccatcgaggaccagtttgaaacccgcaagcatgcgatg
gcgcagaagggtcggattgatacagtctataaacccacgccgccgggtttgctgtatctg
gatgatgccgcttgggaggccgcatcggcagaacatcgtgtggtgcaactgcacccgctg
ccgcaggcctcgggacccggcaccgtggacgccggcgggcggatcgggcgcaacttcgca
cccgagcgccagcaggaaagcatcagtctttttggtgccttggcatcccatattaaggcg
cggatgcaagaggggccggttcttattgcctcttactccgaaggcgcacgtgaacgtctg
accgggctgattgaggatgaaggccttgcggaagccatcccggtgacggatggcacgcgg
atcggcaaaagcggcctgcacctggcggtctgggcgctggaacacgggttccaggcgccg
gacatgaccgtaatttcggagcaggatgtgctgggtgaccggctgatccgggcaccgaag
aaacgccgcaaggccgagaacttcctgaccgaaacccagtcgctcagccctggtgatctg
gtggtgcatgtggaccacggcatcggccgctacaaggggttggaagtggtgactgccgcg
ggtgccgcgcatgaatgcattctgctggaatatgccgaagcgtccaaactgtacctgccg
gttgaaaacatcgaattgctgtccaaatacggccatgacgaagggctgctggaccggctg
ggcggcggtgcctggcaggccaagaaggccaagctcaaggaacgcatccgcgagatggcg
gacaagctgatccgcattgcagccgaacgcgccctgcgcaaggcaccggtgatggacccg
ccgccgcatgcctgggaggagttttccgcccgcttcccgtatcaggagaccgacgaccag
ctgcgcgccatcgaggacgtgatggaggatctgcactcaggccagccgatggaccggctg
atctgcggtgacgtgggttttggtaagaccgaggtggcaatgcgcgcggcttttgtcgcg
gcgatgaccggcctgcaggtggcggtggtggcaccgaccacactgctggcgcgccagcac
gcggcgtcctttgccgagcgttttcgcgggtttcctttgcaggtcaggcagctgtcgcgt
tttgttagcaccaaagaggccagccagacccgtgaagggctggccaaggggaccgtcgat
atcgttgtcggcacccacgccgtgctggccaagaacatcaggttccagaaccttgggttg
ctgataatcgacgaggaacagcactttggcgtgggccacaaggaacggctgaaacagctg
cgcagtgacatccatgtgcttacgctgacggccacaccgatcccgcgcacactgcagctg
tcgctgaccggtgtgcgggacctgtcgatcatcggcaccccgccggtggatcgtctggcg
atccgcacctacgtcagcgagttcgacaccgtcactatccgcgaggcgctgctgcgcgag
cattaccgcggcgggcaaagcttctatgtggtgccacggatcaccgacctgccggatgtc
gaggcgttcctgcaggcgcagctgcccgaactcacctatgtggtggcgcatgggcagatg
gcagcgggcgaacttgatgaccggatgaacgcgttttatgacggtaaatatgacgtcctg
ctggcgaccacgattgtggaatcgggcctcgacattccgaccgccaacacgatggtggtg
caccgcgccgacatgttcggcctgtcgcagctctatcagatccggggccgggtggggcgt
tcgaaaacccgtgcctatgcttacctgactaccaagccacgccagcggctgacaccggcg
gcagagaaacggctgcgggtattgggctcgctcgacacattgggcgcgggctttaccttg
gcctcgcaagaccttgatctccgcggagccggcaacctgctgggcgatgagcaatccggc
cagatgcgcgatgtggggtatgaactgtaccagtcgatgctggaggaggcgattgccaag
atcaaggccggtgagatggagggcctctcggacgccgatgcgcaatgggcgccgcagatc
aacctgggcgttccggtgctgatcccggaagattacgtgccggatctggatgtgcgcctc
gggctgtaccgccgactgtcgtcgctgtcgaccaaggtggagctggaaggttttgcggct
gagctgatcgaccgtttcggcaagctgccgaaagaggtcaacacactgatgctggtggtg
cggatcaagggaatgtgcaaacgcgcaggcattgccaagatggacggcgggccgaaaggc
gcaacgatccaattccacaatgacaaattcgcctcgccccaggggctggtggagttcatc
cagggacagaatgggctggccaaggtcaaggacaacaaaatcgtcgtgcgccgggactgg
aagaaagacagcgacaagatcaagggcgcttttgccattgcccgcgacctggcagagaaa
gtcgtggcagaaaagaaaaaggccaaggcaaaagcgaaagcttga
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