Leishmania sp. Namibia: 94184093
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Entry
94184093 CDS
T10410
Symbol
JIQ42_00324
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lein Leishmania sp. Namibia
Pathway
lein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94184093 (JIQ42_00324)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lein03019
]
94184093 (JIQ42_00324)
03041 Spliceosome [BR:
lein03041
]
94184093 (JIQ42_00324)
03009 Ribosome biogenesis [BR:
lein03009
]
94184093 (JIQ42_00324)
03016 Transfer RNA biogenesis [BR:
lein03016
]
94184093 (JIQ42_00324)
Enzymes [BR:
lein01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94184093 (JIQ42_00324)
Messenger RNA biogenesis [BR:
lein03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
94184093 (JIQ42_00324)
Spliceosome [BR:
lein03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
94184093 (JIQ42_00324)
Complex C
U4/U6.U5 tri-SnRNP related factors
94184093 (JIQ42_00324)
Ribosome biogenesis [BR:
lein03009
]
Eukaryotic type
Pre-60S particles
Helicases
94184093 (JIQ42_00324)
Transfer RNA biogenesis [BR:
lein03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
94184093 (JIQ42_00324)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
FlxA
AAA_16
PhoH
AAA_22
nSTAND_NTPase5
Phage_scaffold
Motif
Other DBs
NCBI-GeneID:
94184093
NCBI-ProteinID:
XP_067704687
LinkDB
All DBs
Position
36:complement(<1279373..>1282546)
Genome browser
AA seq
1057 aa
AA seq
DB search
MNSFPKPSSFPHRHYQPLPSYALSSPSCPAACVYLIAFTLPLLSISCQVCALARTCSSTH
LIRRWVVTPSSPYISTLWNHKYAHKHTPIHIPRSQGTLTGLRMSDSREDEPAAKRARREV
DPAITFPYELDTFQKTSIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSP
IKALSNQKFREFSEKFDSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEMLREVGCVV
FDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTKVHVIHT
DYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAMTSMGAEGGASVGGAASPGNGVS
SGPRGNHKNGGGGRSRGGSSQSMMEIVKLVMDRNMYPVIVFSFAKAECERNALALSRLNF
NNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLLPLLKRGVGIHHSGLLPILKEVVEILF
QAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLTGGEYIQMSGRAGRRGLDR
VGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNLLRVEDVDPEFMMKRSFSQ
FQRLRNKPALEEKDAALRRAIEQINVAHESAFRQYTICEDMIAKKKGEVDQILRQPRFLK
NWVQVGRFVHIIRASDQLDFGWGICRSFAAKSTNPDFSDASTFAIHAAVICMKADVSNPS
ALKPCPVSEYTSEKADLYTMKFDFSDVQSLSTLKTNLPENPDSERGRAEVVQILSKLQRQ
FGCNIPVLTAAQMGAEDAQLKKLQAQVSNLQKQLEGNILASAPTPELQEEFEQYKKKADL
EAQLEQVKGELAGMSKAVFSEELKQMMRVLRRLDYIDKDNIILRKARVACEITTTDENEI
LLTELLFKGVLNSMETEMIVALLSCLVNVHRTPDGFSLPQEFEQPLKDLNEIVTRIATVS
AESGLMQENSSVEKVMPSLMEVTYLWAKGAKFLDLVSKTTAYEGEIVRMMRRLEEMLRQL
ASAARSPAIGSIELHDKFLKGVQLIKRDIVFASSLYL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcttcccgaagccgtcttcgttcccccaccgccactaccaacctttaccttcg
tacgccttgtcctctccctcttgcccagcagcgtgcgtctacctcatcgctttcaccctc
cccctcctttctatctcttgtcaagtatgtgccctcgcacgcacgtgttcaagcacgcac
ctcatccgcaggtgggtcgtgacgccctcatctccatatatatcgacgctgtggaatcac
aaatacgcacacaagcatacaccgatacacattcccagatcccaaggcacgcttacaggg
ctacgaatgtcggacagccgcgaggacgaaccggcggcgaagcgggcacgccgcgaggtc
gacccggccatcactttcccctatgagctcgacacgtttcagaagacgagtatcgacgct
ctcgaagacggcgacagcgtcctcgtatcggcgcacacgtcggcaggtaaaaccacggta
gcgctctacgccatcgccaaggcgctgcgagagaagaagcgtgtcatctacacctccccc
ataaaggcacttagcaaccaaaagttccgcgagttttcagaaaagttcgactccgtcggt
ctcatgaccggcgataccactatcaaggcggactcggattgccttgtcatgacaacggag
attctgcgcagcatgctgtaccgcggaaccgaaatgctccgagaagtcggctgcgtcgtc
ttcgatgaagtgcactacatgcgcgataagtctcgcggcgtggtgtgggaggagacgatc
agcttgctacctgagggttgccagtatgtgttcctctccgccaccatcccgaacgcgcgc
gagtttgcggattgggtggagagcatccatcccaccacaaaggtgcacgtcattcacacg
gactaccgaccagtgccactgcagcattatctatacccggccggggccgacggtatcttc
cttatcgtggatgaaaagggtaaattccgcgatgacaactttggcaaagcaatgacctcg
atgggggcggagggcggcgctagcgtggggggtgcagcaagcccaggcaacggcgtctcc
agcggcccgcgcgggaaccacaagaacggcggcggtggtcgcagtcgcgggggctcctcg
cagtccatgatggagattgtgaagcttgtgatggaccgcaacatgtaccccgtgattgtc
ttctccttcgccaaggcggagtgtgagcgcaacgcccttgcgctctcgcggctgaacttc
aacaacaccgaagaggatgcacttgtgatggaggttttcaacaatgctatggagtcgctg
gcggaggaagaccggaagctgcccgctattgagcatcttcttccgctcctgaagcgcggc
gtcggcatccaccattccggtctgcttccaattctaaaggaagttgtcgagattctcttc
caggcgggcctggtcaaggttctcttctccaccgagaccttctcgatggggcttaacatg
ccggcccgtactgtcgtcttcacctctgtcaagaagttcgacggcgagaagaaccgctac
ctcactggaggcgagtacattcagatgtcggggcgcgccggccgtcggggcctcgaccgc
gtcggcgttgtcattgctatggtggacgaggcggtggagcccgacacgctaaagcagctc
accggcggtggtgccgacgttctgcttagcagcttccacctgacgtacaatatggtgctg
aacctgctgcgtgtcgaggatgtcgatcccgagttcatgatgaagcgcagtttctcgcag
ttccagcgcctgcgcaacaagccagctctggaggagaaagacgccgctttgcgtcgggcc
atagagcagatcaacgtcgcgcacgagagcgcctttcggcagtacacgatttgtgaagac
atgatcgcgaagaagaaaggagaggtggaccaaattctgcgccagcctaggttcctcaag
aactgggtgcaggtggggcgcttcgtgcatattatccgcgcctccgaccagctcgacttt
ggctggggcatctgccgctcgtttgccgcgaagagcaccaacccagactttagcgacgcg
agcaccttcgccattcatgccgccgtgatctgcatgaaggcggacgtgtcgaatccgagc
gccctgaagccctgcccggtgagcgaatacacctcagagaaggcggacctgtacacgatg
aagttcgacttctcggatgtgcagagcctttcgacgttgaagacaaaccttcccgaaaac
ccggactcggagcgggggcgtgccgaggtggtgcagattttgtcgaagctgcagcgccag
tttggctgcaacatccctgtgctcaccgctgcacagatgggtgccgaggatgcgcagctg
aagaagctgcaggcgcaggtgtcgaacttacagaagcagctggagggaaacatccttgcc
tcagcccccacgccagagctgcaagaggagttcgagcagtacaagaaaaaagccgacctc
gaggcccagctggagcaggtaaagggtgagttagctggcatgagcaaggcggtcttctcc
gaagagctgaagcagatgatgcgcgtcctacgtcgcctggactacatcgacaaagacaac
atcatcctccgcaaggcccgcgtcgcgtgcgagataacgacgacagatgagaacgaaatc
ttgctgacggagctgctcttcaagggtgtactaaactcgatggagacggagatgattgtg
gctctcttgtcgtgcctcgttaacgtgcaccgcaccccggacggcttttcgttgccgcag
gagttcgagcagccgctgaaggatctcaacgagattgttactcgtatcgccaccgttagc
gccgaaagcgggctcatgcaggagaacagctcggtagagaaagtgatgccgtcactcatg
gaggtgacatacctctgggcgaagggtgcgaagttcctcgatctcgtgagcaaaactaca
gcgtacgagggtgagattgtgcgcatgatgcgccgcttggaagagatgctgcgccagctg
gcctccgcggcgcggtcgccggcaatcggcagcattgagctacacgacaagttcctcaag
ggcgtccagcttatcaagcgtgatatcgtgtttgcgtcatcgctgtacttgtag
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integrated database retrieval system
