Leishmania sp. Namibia: 94185413
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Entry
94185413 CDS
T10410
Symbol
JIQ42_01676
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lein Leishmania sp. Namibia
Pathway
lein03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lein00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
94185413 (JIQ42_01676)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lein03021
]
94185413 (JIQ42_01676)
03019 Messenger RNA biogenesis [BR:
lein03019
]
94185413 (JIQ42_01676)
Transcription machinery [BR:
lein03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
94185413 (JIQ42_01676)
Messenger RNA biogenesis [BR:
lein03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
94185413 (JIQ42_01676)
U7-dependent histone pre-mRNA processing factors
94185413 (JIQ42_01676)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
CPSF73-100_C
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
94185413
NCBI-ProteinID:
XP_067706007
LinkDB
All DBs
Position
34:<1469277..>1471547
Genome browser
AA seq
756 aa
AA seq
DB search
MATLFLPEAESAAVPANLRSNASDEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPA
KSGLDSLPFFDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMV
MNDFLRIGAGASDLVTSEWLQSTIDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVD
IAGMRALYTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREEREHLFTSSVHD
VVRRGGRCLVPVFALGRAQELLLILEEFWDAHKELQNVPIYYASSLAQRCMKLYQTFVSA
MNDRVKQQHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGD
RRNGIIMAGYCVDGTIAKDVLAKPKEVTRPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFI
HHLTKVKHTILVHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMG
KLANMSLREGEFVSGVMLVSGQHQHSIVHPDDIPVFTDLSVNRIQQAMVLPLPRHRSPLE
VLQVLQRYFAQSKLFEDVTPRQSNNEEVAEAHRAAAERGETRDPDTTLLYVSRDVTVDVH
KSSQAQTTLTITWYSSHYNDLLADVTCIALAKLAEEPHEVEGEDVLVPADVSGQDRIFRV
KCFHYMISQFYPSVKTNLSSGSCTVTLSDGQVANIVDCIEVYLERSNGKKDVDYDAPEVE
KLKQILKRIYLTLFPIPADNGWCDCGMIHGEEPVAE
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcgacattgtttctgccggaagcggagagcgctgctgtgccggccaacctccgctcc
aatgcatcggacgaggtggaggtgctgcccatcggcagtggtggcgaggtgggccgctcg
tgcgtcgtggtgcgctacaaagggcgcggggtcatgcttgactgtggcaaccacccggcc
aaaagcggccttgactccctgcccttctttgacagcatcaagtgcgacgaaatcgatgtt
gtgctcatcacgcacttccacttagaccactgcggggcgctaccgtacttctgcaatcaa
acatccttcaagggtcgtatcttcatgaccagcgccaccaaggccttctacaagatggtc
atgaacgactttctgcgcattggcgccggcgccagtgacctggtcacgagtgagtggtta
cagagcacaatcgaccgcatcgagactgtcgagtaccacgaagaggtcaccgtcaacggc
atctcttttcagccgttcaacgctggtcacgtgcttggggcagccatgttcatggtcgac
atcgccggcatgcgcgccctatacaccggcgacttctcccgagtgccggaccgccacctg
ctgggagcagaggtgccaccgtactcacccgatatcctgattgcggagagcacaaacggc
atccgcgagctcgagtcccgcgaagagcgcgagcacctcttcacgagcagcgtgcacgac
gttgtacgccgtggcggtcgctgtctggtgcccgtctttgctctaggccgcgcgcaggag
ctgcttctcattctcgaggagttctgggatgcgcacaaggagctgcaaaacgttcccatc
tactacgcctcctcgctggcgcagcggtgcatgaaactctaccaaaccttcgtcagcgcc
atgaacgaccgtgtgaagcagcaacatgccaaccatcacaaccctttcgtcttcaaatac
attcattcgctcatggacaccaagtctttcgaggacaacggcccgtgcgtggtcctggcc
tctcccggcatgcttcagtccggcatctcgcttgagctgtttgagcgttggtgcggcgac
cggcgcaacggcatcatcatggccggctactgcgtcgacggaacgattgcaaaggatgtg
cttgcgaagccgaaggaggtgacgaggccggacggcaaagtgttaccgctgcgcatgagc
accatcgaggccgtctccttttccgcccactccgatggccggcaaacgcgcgatttcatt
caccacctcaccaaggtgaagcacacaatcctggtgcacggcaacccaggtgccatgggg
cagctgaagaacaagctccttcaagacttccgggaccgcaacatgtccgtgtacacaacc
atgaaccaagagtcgatccggattccatttgtgcaggagcgcactgcgaaggtgatgggc
aaactggcaaacatgagcctgcgggagggcgagtttgtgagcggtgtgatgcttgtgtcc
ggccagcaccagcacagtattgtccaccccgacgacatccccgtgttcaccgacttgagc
gtaaaccgtattcagcaggcaatggttctccctctcccgcgccaccgctcaccgctggag
gtgttgcaggtgctgcagcggtactttgcgcagagcaaactgttcgaggatgtgacgccg
cgccagtccaataacgaggaggtggcagaggcccatcgggcggccgcggagcgcggcgag
acccgagatcctgacacgacactgctctacgtctccagagatgtcaccgtggacgtgcat
aagagctcgcaggcgcagacgacgctcaccatcacgtggtacagcagccactacaacgac
ctccttgctgacgtcacgtgcatcgcgctcgcgaagcttgccgaggaaccgcatgaggtg
gagggggaggacgtgctcgtgcccgctgacgtctctggccaagaccgtatcttccgcgtc
aagtgcttccactacatgatctcgcagttctatccatctgtcaagacgaacctgtcgtcg
ggcagctgcaccgttaccctttcggatggccaggtagcgaacatcgtggactgcatcgag
gtctacttggagcgcagcaacggcaagaaggacgtcgactacgacgcgccggaggttgag
aagctgaagcagatcttgaagcgcatctatctgacgctgtttcccatcccagccgacaac
ggttggtgtgactgcggtatgattcatggtgaagaaccggtggcggagtga
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