KEGG   Leishmania sp. Namibia: 94189024
Entry
94189024          CDS       T10410                                 
Symbol
JIQ42_05389
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
lein  Leishmania sp. Namibia
Pathway
lein03013  Nucleocytoplasmic transport
lein03015  mRNA surveillance pathway
lein03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lein00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    94189024 (JIQ42_05389)
  09122 Translation
   03013 Nucleocytoplasmic transport
    94189024 (JIQ42_05389)
   03015 mRNA surveillance pathway
    94189024 (JIQ42_05389)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lein03019]
    94189024 (JIQ42_05389)
   03041 Spliceosome [BR:lein03041]
    94189024 (JIQ42_05389)
Enzymes [BR:lein01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     94189024 (JIQ42_05389)
Messenger RNA biogenesis [BR:lein03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     94189024 (JIQ42_05389)
Spliceosome [BR:lein03041]
 Complex C
  Other components
   EJC/TREX
    94189024 (JIQ42_05389)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    94189024 (JIQ42_05389)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 94189024
NCBI-ProteinID: XP_067709840
LinkDB
Position
21:complement(<663241..>664734)
AA seq 497 aa
MRSYSRISTPATKRTTASSITTKIENPSKQRHQYNAHPSTLRHWPSPLPFFPPPSCRLDW
AIMSSDLADFDGDDVRTTVVAAQPMGVGMGTHSAVALGGFQDFCLKSELANAIRENGFEH
PSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHAR
ELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKKEVPAIIVGTPGRMKALVQSK
AFDTTHVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFM
KDATEIYVDQRAKLTLHGLAQFYMNVTEMEKTRRLAEILDVVEFNQAIIFTSSVERCEAL
NRQLQQMKFPSQAVHSRMNQEERLRVYESCKVNNTRIMVATDLFGRGVDFDRINLVVQYD
MASEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENRTYTDGGVMKEVQERFEMKVE
ELTDINSQLNENQYMNK
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgcgctcctactctcgcatctctacccccgcaaccaagagaaccaccgcatctagtata
acaacaaaaatagagaatcccagcaaacagcgacatcagtataacgctcacccgtccaca
ctacgacattggccatcgcctcttccattctttcctcctccctcgtgccgccttgattgg
gcgataatgagcagcgatcttgcagacttcgacggcgacgatgtgaggaccaccgtcgtg
gccgcgcagccgatgggcgtcgggatgggcacccacagcgccgttgccctcggcggcttt
caggacttctgcctgaagagtgagctcgcgaacgccatccgcgagaacggcttcgagcac
ccgtcggaggtgcagcaccaggcgctgcccaaggcgatgcttggcgctgacattcttgcc
caggccaagtcgggtatgggcaagacggccgtgttcgtctttgcgctgctggaacaggtg
gagaaggtgccgcaggggcagaagccgtattgccaggccgtcgtgctggtgcacgcccgc
gagttggcttaccagatcgagcaggagttcaagcgcttcagcaagtacctcccgtacgcc
actacgggtgtcttcttcggcggcatcccggaagacgagaacgtgaagcagctgaaaaag
gaggttccggcgatcatcgttggcacgccgggccgcatgaaggcgctcgttcaaagcaaa
gccttcgacacaacgcacgtgaagtggtttgtcgtggacgagtttgaccgctgcctagag
gatgtgaagatgcgccgtgatgtccaggagatcttcatgaagctgccgaaggagaagcag
gtgatgatgttctccgccacgatgacggatgaactgcgcgatgtggccaagaagttcatg
aaggatgccacagagatttacgtggaccagcgcgcaaagctgaccctgcacggcctggca
cagttctacatgaatgtcacggagatggagaagacacgccggctggcggagattctcgac
gttgtggagttcaaccaggcaatcatctttacgtcctcggtggagcgctgtgaggcgttg
aaccgccagctacagcagatgaagttcccgtcgcaggccgtacactcccgcatgaaccag
gaggagcgcctccgcgtgtacgagagctgcaaggtgaacaacacccgcatcatggtcgcc
accgatctcttcggccgcggcgtcgactttgaccgcatcaacctcgttgtgcagtacgac
atggcctccgaggccgacagctacctgcaccgagtcggccgcgccggtcgctttggcacg
aaggggctgacgattgcgtttattacaacagacgagaaggaaatcaaacgcgaaaaccgc
acctacacggatggcggtgtcatgaaggaggtgcaggagcgcttcgagatgaaggtcgag
gagctgacagatatcaacagccagctgaacgagaaccagtacatgaacaagtaa

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