Leishmania sp. Namibia: 94189968
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Entry
94189968 CDS
T10410
Symbol
JIQ42_06352
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lein Leishmania sp. Namibia
Pathway
lein03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lein00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94189968 (JIQ42_06352)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lein03019
]
94189968 (JIQ42_06352)
03041 Spliceosome [BR:
lein03041
]
94189968 (JIQ42_06352)
Messenger RNA biogenesis [BR:
lein03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
94189968 (JIQ42_06352)
Spliceosome [BR:
lein03041
]
Complex B
Other components
Prp19-related factors
94189968 (JIQ42_06352)
Complex C
94189968 (JIQ42_06352)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
Suf
HAT_Syf1_M
NRDE-2
Motif
Other DBs
NCBI-GeneID:
94189968
NCBI-ProteinID:
XP_067709481
UniProt:
A0A836L728
LinkDB
All DBs
Position
23:748571..750955
Genome browser
AA seq
794 aa
AA seq
DB search
MDSDPRVSALQWEVAKEASASPKTWAELARTTAAAAAADPVERANAVTLVYERAVRAFAS
SYKLWMAYIRYRQQETSRLCRPNEWFQSVREVYERALAELPKMPMLWVGYMEFVAASVVP
RVTMARHVLARALAGLPATQHHLMWKVAKGWCAMPVVPSATVQAVWRLYLSFQRSLHAKR
EYFQVLAQKGDFNVFLQECVHLGLPDTSNKGAVDERDLLLGDVSFWETVQTALQGKGWRF
TGDIGPLRRLIDLGKSRCASPVELSMAFAVFLYGQGHMREGRRELRRLLDEAPEAQTLTS
LYHLAVEVEDQLVESFAVDPNLKQLDDAAYNGVVQHLFGDGDPLSHLERLVREFPLLLNQ
AQLRNSPHNATLWLKRVELVQEDTYAGRSTFDDLVALYRQAIQQCTAGMSRVEGAAAQLF
SSYAQTLIRGGKLDSAILVLSEGTWCVPFTSAALNVQLLGLLVEAQLMSSSSPLSVRDAL
AVRLTSGARSGGSKRGRSGLLQSSAALPHVIHHPHAWIMWCDLCAAYDAVNAAAWRHLVE
ALASSSAFSAEAACYVAHKAFVCRQESMAVMMLERAVAATRQQPTAHLFVLEQYLSFLHV
RDGRKVPLHQFREVFSLVQQVTPVAIRTAPAAVIDLHVSCAYMEAAIGLYGTAVRMMQEI
SLVAIAALRGRDEHLRVLQAILEHSITFTEQRRGYDSVRTYCGALVQRLQHALLLQRVAL
HWAAIEKRSGNTAQAHLILDACGDSQDPSTEHGEVYWRLWESLCTSVEEFEKVARRRQQA
AIRFGKRGSAKGPV
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgacccgcgagtgagtgccctgcagtgggaggtagcgaaagaggcctcggct
tcgcccaagacatgggcagagctggcccgcaccaccgccgcggccgctgcggctgatccc
gtggagcgagcgaacgccgtaacgctggtctacgagcgcgccgtgcgtgcgttcgcctcc
tcctacaagctgtggatggcatacattcgctaccgccagcaggagaccagccggctttgc
cggccgaacgagtggttccagtctgtgcgtgaggtgtatgagcgggcgttagcggagctt
ccaaaaatgccgatgctgtgggtgggctacatggagtttgttgctgcctcggtagtgcca
cgtgtgacgatggcgcggcacgtactcgcgcgagcccttgcagggttgccggcaactcag
catcatcttatgtggaaagtcgcaaagggctggtgcgctatgcctgtcgtacccagcgct
acagtgcaagctgtttggaggctttacctgtcctttcagcgctcgctgcatgcgaagcgc
gagtactttcaggtgctcgcgcagaagggcgacttcaacgtgttcctgcaagagtgcgtg
cacctgggactgcccgatacgtcgaacaagggcgccgtcgacgagcgcgacctgctcctg
ggcgacgtgagcttttgggagactgtgcagacggcactgcaggggaagggctggcgcttc
acaggcgatatcggccctctgcgtcggttgatcgatcttggaaaatcgcggtgcgcttcc
ccagtcgagctttctatggcctttgccgttttcctttacggccaggggcacatgcgagag
ggccgaagagagctgcgtcggttgctagacgaggccccagaggctcagacgctgacttcg
ctctaccaccttgccgtggaggtggaggaccaactcgtggagtctttcgcggtggacccc
aatctcaagcagctcgacgacgccgcgtacaacggcgtggtgcagcacctcttcggtgac
ggcgacccgcttagccacctcgagcgtcttgtgcgcgagtttccgctgctcctcaaccag
gcgcagctacgcaatagcccgcacaatgcgacactgtggctgaagcgtgtagagctggtg
caggaggacacctatgcgggccgctccacctttgacgatctcgtcgctctgtatcgccag
gctattcagcagtgcactgcagggatgtcgcgtgtggaaggcgcagcggcgcagctattt
tcttcctatgcccagactctcattcgcggcggcaagctggacagcgccatcctggtgcta
agtgaggggacgtggtgtgtgcccttcaccagtgccgcgcttaacgtgcagcttcttggt
cttcttgtggaagcgcagctcatgtcgtcctcctcccccttgtccgtgcgggatgcgctg
gcggtgcgactgaccagtggcgctcgcagcggaggttcaaagcgcggccgaagcggacta
ctgcagtcgagtgcagccctgccccacgtgatacaccacccacatgcgtggatcatgtgg
tgtgacctttgcgctgcctacgacgccgtgaacgcggccgcttggcggcaccttgtcgag
gcgctcgccagctcgtccgccttctccgctgaggccgcctgctatgtagcccacaaggcc
tttgtttgtaggcaagagtcgatggctgtcatgatgctagagagagcggtcgctgccacg
cggcagcagcctaccgcgcatctgttcgtgcttgagcagtacctctccttcctgcacgtc
cgtgacggtcgaaaggtgcctctgcatcagtttcgtgaggtgttcagccttgtgcagcaa
gtgaccccggttgccatacgcactgcaccggcggccgtcatcgacctgcacgtcagctgt
gcttacatggaggcagcgatcggcctctacgggacagctgtccgcatgatgcaggagatt
tccctagttgctattgcagcgcttcgggggcgtgatgagcacctccgtgtcctgcaggcc
attcttgagcactctatcaccttcacggagcagcgcaggggctacgattcagtgcgcacc
tactgcggagcgctcgttcaacgactccagcacgcactcttgctgcagcgtgttgcgctt
cactgggctgctatcgagaagcgctctggcaacacggcacaggcgcatcttatcctcgac
gcttgcggggacagccaggatccgtccacggagcatggcgaggtgtactggcggctgtgg
gagtctctctgcacaagtgtggaggagtttgaaaaagtggctcggcgtcggcaacaagcg
gcgattcgcttcggcaaacgtgggagtgcgaaggggccggtgtaa
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