KEGG   Leishmania sp. Namibia: 94190467
Entry
94190467          CDS       T10410                                 
Symbol
JIQ42_06866
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
lein  Leishmania sp. Namibia
Pathway
lein03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lein00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    94190467 (JIQ42_06866)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lein03021]
    94190467 (JIQ42_06866)
   03019 Messenger RNA biogenesis [BR:lein03019]
    94190467 (JIQ42_06866)
Transcription machinery [BR:lein03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     94190467 (JIQ42_06866)
Messenger RNA biogenesis [BR:lein03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     94190467 (JIQ42_06866)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_2 zf-CCCH_4 Torus zf-CCHC zf-CCCH_3 zf-CCCH_12 zf-CCCH_DUS3L zf-CCHC_2 zf-CCCH_RBM22 zf-CCCH_9 zf-C3H1
Other DBs
NCBI-GeneID: 94190467
NCBI-ProteinID: XP_067711655
LinkDB
Position
9:complement(<328640..>329641)
AA seq 333 aa
MFVDDAAGTHFDFEDTLPKEHPRTEKKLEICQDFQRGRCRFGDTCPQRHIISAYRTVQTK
VCKHWLRGACVNGDNCLYLHEYDNRYVPQCAFFERVGECTNPECPFLHTRPNESLPECAA
YRRGFCPMGPSCRLRHVKRESACPYYLAGFCPLGPRCPLGHPIQERYDRDAVSKRILAKM
IVERADDPTFNRSATCYRAGCFDPGHLAPDCPGPQHSVLHKALGEIQEPGQPIGTLENGG
RGSGGASHRRCFLCDEEGHTMKDCPTNTHRNQHRSGGGGGPGAPQGNSSGAGIANRRRLR
REGGAGVGGGPIGGGGTGFGGGGGRRRPGRDQG
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgttcgttgacgatgccgccggcacgcacttcgactttgaagacacgctgcccaaggag
catccccgcacggagaagaagctagaaatctgccaagacttccagcgcggccgctgccgt
tttggcgacacctgcccccagcgccacatcatctcggcttatcgtaccgtccagacgaag
gtatgcaagcactggctgcgtggtgcctgcgtgaacggggacaactgcctttaccttcac
gagtacgacaaccgctacgtcccgcagtgcgccttctttgagcgcgtgggcgagtgcacc
aacccggaatgccctttcctgcacacgagaccaaacgagtcgctgccagagtgcgccgcg
taccgccgcggcttctgcccaatgggccccagctgccgccttcgacacgtgaagcgggaa
tcggcgtgcccatactacctcgctggcttctgcccgttaggcccgcgctgtccgctgggg
caccccatccaagagcgctacgaccgcgacgccgtctcgaagcgcatcctggccaaaatg
attgtggagcgcgccgatgacccaaccttcaaccgcagcgcaacctgctacagagccggc
tgctttgaccctggccatctcgcgccggactgtccaggtccgcagcacagcgttctgcac
aaagctcttggcgagattcaagagccaggtcaacccattggcactttggagaatggtggg
cgcggcagtggcggcgcctcacatcgtcgctgcttcttgtgtgatgaagaggggcacacg
atgaaagactgtccgacgaatacgcaccgtaatcagcaccgcagtggagggggtggcggt
cctggcgccccacaaggcaatagcagtggagctggaatagctaaccgacggcgcttgcgg
cgagaaggcggtgccggcgttggaggcgggcctattggtggtggtggtactggcttcggt
ggcggaggcggtcgacgacgccccggtcgcgatcagggctaa

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