Leishmania sp. Ghana 2012 LV757: 94175975
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Entry
94175975 CDS
T10390
Symbol
GH5_00327
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
leis Leishmania sp. Ghana 2012 LV757
Pathway
leis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94175975 (GH5_00327)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leis03019
]
94175975 (GH5_00327)
03041 Spliceosome [BR:
leis03041
]
94175975 (GH5_00327)
03009 Ribosome biogenesis [BR:
leis03009
]
94175975 (GH5_00327)
03016 Transfer RNA biogenesis [BR:
leis03016
]
94175975 (GH5_00327)
Enzymes [BR:
leis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94175975 (GH5_00327)
Messenger RNA biogenesis [BR:
leis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
94175975 (GH5_00327)
Spliceosome [BR:
leis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
94175975 (GH5_00327)
Complex C
U4/U6.U5 tri-SnRNP related factors
94175975 (GH5_00327)
Ribosome biogenesis [BR:
leis03009
]
Eukaryotic type
Pre-60S particles
Helicases
94175975 (GH5_00327)
Transfer RNA biogenesis [BR:
leis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
94175975 (GH5_00327)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Myosin_tail_1
nSTAND3
FlxA
PhoH
AAA_16
AAA_22
nSTAND_NTPase5
Phage_scaffold
Motif
Other DBs
NCBI-GeneID:
94175975
NCBI-ProteinID:
XP_067696600
LinkDB
All DBs
Position
36:complement(1254292..1257321)
Genome browser
AA seq
1009 aa
AA seq
DB search
MCPRTHVVKHAPHPQLGRDALISIYISTLWNHKYAHKHTPLHIPGSQDTLTGLRMSDSRE
DEPAAKRARREVDPAITFPYELDTFQKTSIDALEDGDSVLVSAHTSAGKTTVALYAIAKA
LREKKRVIYTSPIKALSNQKFREFSEKFDSVGLMTGDTTIKADSDCLVMTTEILRSMLYR
GTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVES
IHPTTKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAMTSMGAESGAS
VGGAAGPSNGVSSGPRGNHKNGGGGRSRGGSSQSMMEIVKLVMDRNMYPVIVFSFAKAEC
ERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLLPLLKRGVGIHHSGL
LPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLTGGEYIQ
MSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNLLRVEDV
DPEFMMKRSFSQFQRLRNKPALEERGAALRRAIEEINVAHESAFRQYTICEDMIAKKKGE
VDQILRQPRFLKNWVQVGRFVHIIRASDQLDFGWGICRSFAAKSTSPDFSDASTFAIHAA
VICMKADVSNPSALTPCPVSEYTSEKADLYTVKFDFSDVQSLSTLKTNLPENPDSERGRA
EVVQILSKLQRQFGGNIPVLTAAQMGAEDAQLKKLQAQVSNLQKQLEGNILASAPAPELQ
EEFEQYKKKADLEAQLEQVKGELAGMSKAVFSEELKQVMRVLRRLDYIDKDNIILRKARV
ACEITTTDENEILLTELLFKGVLNSMETEMIVALLSCLVNVHRTPDGFSLPQEFEQPLKD
LNEIVTRIATVSAESGLMQENSSVEKVMPSLMEVTYLWAKGAKFLDLVSKTTAYEGEIVR
MMRRLEEMLRQLASAARSPAIGSIELHDKFLKGVQLIKRDIVFASSLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgtgccctcgcacgcacgtggtcaagcacgcacctcatccgcagttgggtcgcgacgcc
ctcatctccatatatatatcgacgctgtggaatcacaaatacgcacacaagcatacaccg
ttacacattcccggatcccaagacacgcttacagggctacgaatgtcggacagccgcgag
gacgaaccggcggcgaagcgggcacgccgcgaggtcgacccggccatcactttcccctat
gagctcgacacgtttcagaagacgagtatcgacgctctcgaagacggcgacagcgtcctc
gtatcggcgcacacgtcggcaggtaaaaccacggtagcgctctacgccatcgccaaggcg
ctgcgagagaagaagcgtgtcatctacacctcccccatcaaggcacttagcaaccaaaag
ttccgcgagttttcggaaaagttcgactccgtcggcctcatgaccggcgataccaccatc
aaggcggactcggattgccttgtcatgacaacggagattctgcgcagcatgctgtaccgc
gggaccgaaatgctccgagaagtcggttgcgtcgtcttcgatgaggtgcactacatgcgc
gataagtctcgcggcgtggtgtgggaagagacgatcagcttgctacctgagggttgccag
tatgtgtttctctccgccaccatcccaaacgcgcgcgagtttgcggattgggtggagagc
atccatcccaccacaaaggtgcacgtcattcacacggactaccgaccagtgccactgcag
cattacctatacccggccggggccgacggtatcttcctcatcgtggatgaaaagggtaaa
ttccgcgatgacaacttcggcaaagcaatgacctcgatgggggcggagagcggcgctagc
gtggggggtgcagcaggcccaagcaacggcgtctccagcggcccgcgcgggaaccacaag
aacggcggcggtggtcgcagtcgcgggggctcctcgcagtccatgatggagattgtgaag
cttgtgatggaccgcaacatgtaccccgtgattgtcttctccttcgccaaggcggagtgt
gagcgtaacgcccttgcgctctcgcggctgaacttcaacaacaccgaagaggatgcactt
gtgatggaggttttcaataatgctatggagtcgctggcggaggaagaccggaagctgccc
gctattgagcatcttcttccgctcctgaagcgtggcgttggcatccaccattccggtctg
cttccaattctaaaggaagttgtcgagattctcttccaggcgggcctggtcaaggttctc
ttctccaccgagaccttctcgatggggcttaacatgccggcccgtactgtcgtcttcacc
tctgtcaagaagttcgacggcgagaagaaccgctacctcactggaggcgagtacattcag
atgtcggggcgcgccggccgtcggggcctcgaccgcgtcggcgttgtcattgctatggtg
gacgaggcggtggagcccgacacgctaaagcagctcaccggcggtggtgccgacgttctg
cttagcagcttccacctgacgtacaatatggtactgaacctgctgcgtgtcgaggatgtc
gatcccgagttcatgatgaagcgcagcttctcgcagttccagcgcctgcgcaacaagcca
gctctggaggagagaggcgccgctttgcgtcgggccatcgaggagatcaacgtcgctcac
gagagcgcctttcggcagtacacgatttgtgaagacatgatcgcgaagaagaaaggagag
gtggaccagattctgcgccagcctagattcctcaagaactgggtgcaggtggggcgcttc
gtgcatattatccgcgcttccgaccagctcgactttggctggggcatctgccgctcgttt
gccgcgaagagcaccagcccagactttagcgacgcgagcacctttgccattcatgccgcc
gtgatctgcatgaaggcggacgtgtcgaatccgagcgccctgacgccctgcccggtgagc
gaatacacttcagagaaggcggacctgtacaccgtgaagttcgacttctcggatgtgcag
agcctttcgacgttgaagacaaaccttcccgaaaacccggactcggagcgggggcgtgcc
gaggtggtgcagattttgtcgaagctgcagcgccagtttggcggcaacatccctgtgctc
actgctgcacagatgggtgccgaggatgcgcagctgaagaagctgcaggcgcaggtgtcg
aacctgcagaagcagctggagggaaacatcctcgcctcagcccccgcgccagagctgcaa
gaggagttcgagcagtacaagaaaaaggccgacctcgaggcccagctggagcaggtgaag
ggtgagttagctggcatgagcaaggcggtcttctccgaagaactgaagcaggtgatgcgc
gtcctacgtcgcctggactacatcgacaaagacaacatcatcctccgcaaggcccgcgtc
gcgtgcgagataacgacgacagatgagaacgaaatcttgctgacggagctgctcttcaag
ggtgtactaaactcgatggagacagagatgattgtggctctcttgtcgtgcctcgttaac
gtgcaccgcaccccggacggcttctcgttgccgcaggagttcgagcagccgctgaaggat
ctcaacgagattgttactcgtatcgccaccgttagcgccgaaagcgggctcatgcaggag
aacagctcggtagagaaagtgatgccgtcactcatggaggtgacatacctctgggcgaag
ggagcgaagttcctcgatcttgtgagcaaaactacagcgtacgagggtgagattgtgcgc
atgatgcgccgcttggaagagatgctgcgccagctggcctccgcggcgcggtcgccggca
atcggcagcattgagctacacgacaagttcctcaagggcgtccagcttatcaagcgtgat
atcgtgtttgcgtcatcgctgtacttgtag
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integrated database retrieval system
