Leishmania sp. Ghana 2012 LV757: 94177572
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Entry
94177572 CDS
T10390
Symbol
GH5_02024
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
leis Leishmania sp. Ghana 2012 LV757
Pathway
leis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94177572 (GH5_02024)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leis03019
]
94177572 (GH5_02024)
Messenger RNA biogenesis [BR:
leis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
94177572 (GH5_02024)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
94177572
NCBI-ProteinID:
XP_067697843
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Position
34:<1379494..>1381716
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AA seq
740 aa
AA seq
DB search
MPSKVDDVILPSTKDVVSAVFGPVKEYSKLSAQLPLDDYDYHLAFPGFRKRIRDDSETLV
ALMDACTQMLPKRRRTSFSSEEDPRSGALHLVETERNAVMEAIDSLLENVDSLLDEVKGR
KLDAQEQLSITFGSELTASSHRDGVAEAAGATSAHGAVRRVAHIRRPQLLFDIPVDNSLA
PFVPHYFDASGQSHVGVAGEHPFEAIIKDFAIPESQLLPRAEVPPVPLDACPLTFVDTPA
ALQAMVEKLLLSSEIAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLQLRSSMGALAPV
FLNPAILKVLHGSREDIRWLQKDFSLYVVNLFDTGVALQTLHMPHSLAFAVDHFCQVKLN
KKYQTADWRMRPLSAEMVHYARQDTHFLLYVYDRLKALLFNSEGRASIGSLLAHVYNESK
RLSLQLYEKPNVVPEETYKIALGRSLSGLSKLQEKVARDVFNWRDSAAREVDDSPTAVLH
LSSVLAIASKLPTTAKELLGCCAPATAVVRDNVALLVDLVKEAVASSEGDVAAKAHVGSA
NGEFAENRDRGARTAANKEWAFYRSLCPTGVHRPMTGTLPSLASVVKTVAPTEVPEEESS
MLLSHSTPSPWFNAMQALSHALANRPLQHVDLPGSDVCAARQAAAAAFAAAVQAAKASVW
EDKEREAVARSRSSSVGKLSREAEAEEESKAEVTATPEAEVKHASVIPVDQRAFSIKQEY
GIGAKTQIVKARKGNTRRKE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaaaggttgatgatgttattcttccctcgacaaaggatgtcgtttctgccgtc
tttgggcctgtgaaggagtatagcaagctctccgcgcagcttcctctggacgactacgat
tatcaccttgcctttccaggatttcgcaagcgtattcgcgatgatagtgaaactctggtt
gcactcatggacgcatgtacgcagatgctgccaaagcggcgtcgcaccagtttctcctcg
gaggaagatccgcgcagcggcgccctacacttagtcgagacagagcgtaacgcagtgatg
gaggcgattgactcgctgctagaaaatgtggactctctcctcgacgaggtgaaagggcgt
aagctggacgcacaggagcagctatctatcacctttggctccgagctgactgcctcgtca
caccgcgacggggtcgcagaggctgctggagccaccagcgcgcacggggctgtcaggcgc
gtggcccatatccggcgcccgcaactcctttttgacatcccggtcgacaattctttggcg
ccgtttgtgccgcactacttcgacgcatcggggcagtcacacgttggtgtcgctggagag
catcctttcgaggctatcatcaaggacttcgccatcccggaatcgcagctgcttccgcgg
gcggaggtgccgccggtgccgctggacgcctgcccgctcacttttgtggacacgcccgcg
gcgctgcaggcgatggtcgaaaagctgttgctctctagcgaaatcgccgtggacttggag
caccacgacttttacagctatcagggcttcacatgcctcatgcaaattagcacccgcgag
gaggacttcattgtggactgcctgcagctgcgctcttcaatgggggcgctggcgccggtc
ttcttgaacccggcgattctgaaagtgctgcacggctcgcgagaagacattcggtggctg
cagaaagacttctccctttacgtggtgaacctcttcgacacgggcgtggctctccagacg
ctgcacatgccgcacagtctcgcgttcgccgtcgaccatttctgccaggtgaagctgaac
aagaagtaccagacggctgactggcgtatgcggccgctgtcggcagagatggtgcactac
gcgcggcaagacacgcactttctactctacgtctatgaccgactcaaggcactcctcttc
aacagcgagggccgcgccagtattggcagcctgctggcgcacgtctacaatgaaagcaag
cgactctccttacagctttacgagaagccgaacgttgtgcctgaggagacatataagatc
gcccttggccgaagccttagtggactaagcaagctccaggaaaaagtcgcgcgtgacgtg
ttcaactggcgggactcggcggcacgtgaggtggatgattcacccacggctgtgttgcac
ctgtcctcggtgctggcgattgcatctaagctgccaacaacagcgaaggagctgctggga
tgctgcgcgccagccacagcggtggtacgcgacaacgtcgctctcctggtggacttggtg
aaggaagccgtggcgagtagcgagggtgacgtggcggcaaaggcgcatgtggggtcggcc
aacggagaattcgcggagaacagggacaggggtgcgaggacggcggcaaacaaggagtgg
gcgttttaccgctccctctgccccacaggcgtgcaccgtcctatgacaggaacgctacct
tcattggctagtgttgtgaagacggtggcaccaaccgaggtgccggaagaggagtcctcc
atgcttctctcgcactcgacgccgtcaccgtggttcaacgccatgcaagccctctcacat
gctctcgccaaccgccctctgcagcacgtcgaccttccgggctcggacgtgtgtgccgcc
cgccaggcagcggccgcagccttcgcagcagcggttcaagcggccaaggcgtctgtatgg
gaagacaaggaacgagaagcagtcgctcgcagtcgtagctcgagcgtcggcaaactgtcg
cgtgaagcggaagcggaagaagaatcgaaggcggaggtcactgcgacaccggaggccgag
gtgaaacacgcatccgtcataccagtggaccagcgggccttctccatcaaacaggagtac
ggcattggggccaagactcagatcgtaaaagcccgcaaaggaaatacaaggcgaaaggag
tag
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