Leishmania sp. Ghana 2012 LV757: 94183283
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Entry
94183283 CDS
T10390
Symbol
GH5_08067
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
leis Leishmania sp. Ghana 2012 LV757
Pathway
leis03008
Ribosome biogenesis in eukaryotes
leis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leis00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
94183283 (GH5_08067)
09123 Folding, sorting and degradation
03018 RNA degradation
94183283 (GH5_08067)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leis03019
]
94183283 (GH5_08067)
03009 Ribosome biogenesis [BR:
leis03009
]
94183283 (GH5_08067)
03016 Transfer RNA biogenesis [BR:
leis03016
]
94183283 (GH5_08067)
03036 Chromosome and associated proteins [BR:
leis03036
]
94183283 (GH5_08067)
Messenger RNA biogenesis [BR:
leis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
94183283 (GH5_08067)
mRNA degradation factors
5'-3' decay
5' exonucleases
94183283 (GH5_08067)
Ribosome biogenesis [BR:
leis03009
]
Eukaryotic type
Pre-60S particles
RNases
94183283 (GH5_08067)
Transfer RNA biogenesis [BR:
leis03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
94183283 (GH5_08067)
Chromosome and associated proteins [BR:
leis03036
]
Eukaryotic type
Gene silencing
piRNA pathway
94183283 (GH5_08067)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
XRN1_D2_D3
Motif
Other DBs
NCBI-GeneID:
94183283
NCBI-ProteinID:
XP_067703772
LinkDB
All DBs
Position
6:complement(119013..123518)
Genome browser
AA seq
1501 aa
AA seq
DB search
MGVPKLFRWAAERFPSIITPFKDSPPPVDNLYLDINGIIHNCTHPNDVDATRRSPTEKEM
IQAMFIYLEKLFNAIQPRKYFLLAVDGVAPRAKMNQQRQRRYRAGYEMMIAREEALAMGE
EVPEEKDVFDSNCITPGTPFMVRVSKAFQYFITMKLSTDPAWQGCEVIFSGHDCPGEGEH
KIVDFIRRRKMQPNYDPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGPGSRKERE
RQEEDEAKGLVKDKAYHKADEFVLLHINVFRDYLQLEVKGCLAKAKSSASVDFERVIDDF
VFMCFFIGNDFLPTLPTIGINDGSIPVILRLYVDNLLSKNKYLTHKGEIDWRNAEVWLNE
VGKLEFETLRRRQQEEAEYQKNRARRDPTHEVDTASAIPITSILEFKQRYYGEKHGFAGG
WDANGNDMRQLREHYVEGLMWVMHYYYQGVPSWKWFFPHYYAPMASDMVNLPAIASRVSF
ELGKPFQPHQQLLAVLPPMSYLSMPKAYWPLLRSPSSPLAKYLPEHIVIDREGARAPWEG
IVLIPFIDERTLLAAYESVQKNVSPEDAANNVNGPPLRFFYDSKMTPYDVMDEMFGPLRN
VFVKRETYAFPHIDKFVPQLCPGVYVGTRQLEGFSTLQSKRDLILPIFETGVVTIFGRPT
KNDSLILQLRDFFKAKSVDQVATLVGKEVLVGFPHYKRARIASVKDVHKCITASYSKEGT
FSGTEEHKNNRDESAAFVKEADTHARFMKSQLGLAVEQVDVLVYVHRFNGMQVTRKGHIE
RHFATTWTCYPIQLVCTLDSIDMKEDSRYVERYRSEDDSAFGARCAYIGPQPKSKKSQVD
VYGSCGTVVTAGQHDTTTQQGDQLTVRLKVFQEPLRLPAELLQYAAQRNWTALPQVATTL
DILPHTLTSICSSIVTSPQFGSRELGLCLKFTGRCLAKVGYAKLVQHSLNPWYVGNKDIF
ARLEKDTEDIGYHVEMAEKSDAVGNSNSNRGGSGTWYFSRDAQELIRDYVRRFRPLIQYM
EAGGVNSNSVEPQHFLTGKWRDRDADEVLTEIETFLADSGLRETPMITATEEAFPQQQLE
QLETSLQEQQNRSFKELSLRQVSRNQLYFPVTRSSGGHLVPLPLPQEQTFYLGSRVVNCR
ATGTVPFGAQGTIVRLLASGREAEVVYDTPFTGGTRLDGRLKDTRAAITKLSALLVLKPT
DAPQPQPQQLPDARAAAATATDGSAKLRELEFLLQANGIHVDASGKSAASPPSLPEAFQS
PAVASARSAPADSAASHSSTAGASASVVPRPRSAAATGQTQASATPGKRATPASATAHLS
SSAPLVAPITRETHGSPASLKITAASGSSGISLQDLAKHLPSSTAQSSPVLTASPTGNAP
ASAAAPAATSITIPAPKSAQQQQQQHSVQPASPAVSAPATASAAAATSPKGSSESKEMPP
DSAARRKSRDLHVIPDDFVSGRFKIKYTNTGSLFRSWLDTFTAEAVRKTLAELEAEKVNP
V
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaagctcttccgctgggcggcggagcgcttcccctccatcataaccccc
ttcaaggactctccaccgcccgtggacaacctctacctcgacatcaacggtattatccac
aactgcactcacccgaacgacgttgatgcgacgcggcgcagccctacagagaaagagatg
atacaggccatgttcatctatctcgagaagcttttcaacgccattcagccgcgcaagtac
ttcctgcttgctgtcgatggcgtcgcaccgcgcgcgaagatgaatcaacagcgtcagcgc
cgctatcgtgccggttacgagatgatgatcgcgcgtgaggaggcgctggcgatgggtgag
gaggtgccggaggagaaggacgtcttcgacagtaactgcatcacccctggtaccccgttc
atggtgcgcgtgagcaaggcgtttcagtacttcatcacaatgaagctgtcgactgatccg
gcgtggcaggggtgtgaggtcatcttctctggccacgactgccccggcgagggcgaacac
aaaatcgttgacttcatccgccggcgcaagatgcagccaaactacgaccccaacgagacc
cactgcatgtacggcctcgacgcggatctcgtcatgctggcgctcgccacgcacgagccg
cactttgtgctgctgcgcgaggtggtcacgttcggtcccggatcccgcaaggagcgggag
cggcaagaggaggatgaggcgaagggcctcgtaaaggacaaggcgtaccacaaggcggac
gagtttgtcctgctacacattaacgtcttccgcgattacctccagctggaggtaaaggga
tgcctggcgaaagcgaagagcagtgccagtgtcgacttcgagcgcgtcatcgatgacttt
gtgttcatgtgcttctttattggcaacgacttcctgccgacgctgccgactataggcatc
aacgatggcagcataccggtgatcctgcgcctctacgtcgacaaccttctcagcaagaac
aagtacctgacgcacaagggcgagattgactggcgcaacgccgaggtgtggctcaacgag
gtcggcaagcttgagttcgagacgctgcgccggcgtcagcaggaggaggcggagtaccaa
aagaaccgcgctcgccgagaccccacccatgaggtggacaccgcctccgcgatacctatc
acgtcgatcctggagttcaagcagcgctactacggcgagaagcacggctttgctggcggg
tgggatgcgaacggcaacgacatgcgccagctgcgagagcactacgtagaggggctcatg
tgggtcatgcattactactatcaaggcgtgccttcatggaagtggttcttcccgcactac
tacgcccccatggcgagcgacatggtgaaccttcccgccatcgcttcccgcgtttcgttc
gagctcggcaagccgttccagccgcaccagcagctgctggccgtgctgccacccatgtca
tacctgtccatgcccaaagcctactggcctctgctgcgcagcccgagcagcccgcttgcc
aagtacctcccagagcacatcgtcattgaccgtgaaggcgcgcgcgcgccttgggaaggc
atcgtgctgatccccttcatcgacgagcgcacgttgctcgccgcttacgagtcggtgcag
aagaacgtcagccccgaggacgccgcaaacaacgtgaacggcccgccgcttcgattcttc
tacgacagcaagatgacgccgtacgacgtgatggatgagatgttcggcccgctccgcaac
gtcttcgtgaagcgcgagacgtatgcgtttcctcacatcgacaagttcgtcccgcagctg
tgccccggcgtgtacgtcggcacgcggcagcttgaaggcttcagcaccctccagtcgaag
cgtgacctcatcctgccgatcttcgagaccggcgttgtgacgatctttggccgtcccacg
aagaatgacagcctcatactgcagttgcgcgacttcttcaaggccaagtcggtcgaccag
gtggcgacgctcgtcggcaaggaggtgctcgtcggtttcccgcactacaagcgcgcccgc
atcgcttccgtcaaggatgtgcacaagtgcattacggcctcgtacagcaaagaggggact
ttcagcggcaccgaggagcataagaacaaccgagacgagtcagccgccttcgtgaaggag
gcggacacgcacgcgcgcttcatgaagtcgcagctggggctcgccgtggagcaggtcgac
gttctcgtgtacgtgcaccgcttcaacgggatgcaggtgacgcgcaagggccacatcgag
cggcacttcgcgaccacctggacatgttacccaatccagctggtctgcaccttggatagc
attgacatgaaggaagacagccgctacgttgagcggtatcgcagcgaagatgacagcgcc
tttggcgcccgctgcgcctacataggcccacagcccaagtcgaagaagtctcaggtggac
gtgtacggcagctgcggcacggtcgtgacggctggtcagcacgacacgacgacgcagcag
ggcgatcagctgacggtgcgccttaaggtgtttcaggagccgctgcggctgccggcggag
ctgctgcagtacgccgcgcagcgtaactggacggcgctgccgcaggtggcgacgactctc
gacattttgccgcataccctcacgagcatctgcagctccatcgtcacgtcgccgcagttc
ggctctcgcgagctggggctgtgccttaagttcacggggcggtgcctcgccaaggtcgga
tacgcgaagctggtccagcacagcctcaacccgtggtacgttggaaacaaagacatcttc
gcccgcctagaaaaggatacggaggacatcggctaccacgtcgagatggccgagaagagc
gacgccgtggggaactcgaacagcaaccgcggtggcagcggcacgtggtacttctcccgt
gacgcacaggagctcatacgcgactacgttaggcgatttcgcccactcatccagtacatg
gaggcagggggcgtcaactcaaacagcgtggagccacaacacttcttgacgggcaagtgg
cgcgacagagatgccgacgaggtactgacggagatcgagacattcttggcggactcaggg
ctgcgcgaaacgccgatgattacggccacggaggaggcttttccgcagcagcagctggag
cagctcgagacatcgctgcaggagcagcagaaccgcagcttcaaggagctctcgctgcgg
caggtgagccgcaatcagctgtacttccctgtcacccgcagcagcggcggccatctcgtg
ccgctgccgttgccgcaggagcaaacgttctatttgggctcgcgcgtcgtgaattgccgc
gccacgggtaccgttcccttcggcgcgcaaggcacgatcgtgcgcctgctggccagcggc
agagaggccgaggtcgtgtacgatacccccttcacgggcggcacgcgactcgatggccgc
cttaaggacactcgcgcggccatcacgaagctgtcggcattgcttgtgcttaagcccacg
gatgcgccgcagccacagccacagcagctgccggacgccagggccgctgcggcgaccgcc
acagacgggtcagcgaagctgcgggagctcgagtttctcctgcaagcgaacggcattcac
gtggacgcctcgggcaagtccgcggcgtcgccgccatcgctgcctgaggcgttccagagc
cccgcggtcgcctcggctcgcagcgccccggcggactctgctgccagccatagcagcact
gcgggcgccagtgccagcgttgtgccgcggccacgcagtgccgccgcgaccgggcagacg
caggcgtcagcgacaccaggcaagcgcgccacccccgcctctgccactgctcatttgtcc
tccagtgcgcctttggtggcgccgatcactagagagactcacggcagtcctgcaagtctc
aagataacggctgcctcggggagcagcgggatcagcctgcaggacttagccaaacacttg
ccgtcttccaccgcccagagctcgcctgtccttaccgcctcgccgaccggtaacgctcca
gcatcggccgccgcgccggcagctaccagcatcaccatcccggctcccaagtctgcgcag
cagcagcagcagcagcactcagtgcaacccgcttcgcctgcggtgtctgcgccagcgaca
gcatcggcggcggcggcgacctcgccgaagggaagcagcgagtcgaaagagatgcctccc
gactcggccgcgcgccgcaagtcgcgtgacctacacgtcattccggacgacttcgtgagt
ggacggttcaagatcaagtacacgaatacgggctcgctgttccgcagctggctcgacaca
ttcacggcggaggcggtgcgcaagaccctcgccgagcttgaggcggagaaggtgaatccc
gtgtga
DBGET
integrated database retrieval system
