Leifsonia sp. ZF2019: IT072_00425
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Entry
IT072_00425 CDS
T10186
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
leiz Leifsonia sp. ZF2019
Brite
KEGG Orthology (KO) [BR:
leiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
leiz03016
]
IT072_00425
Enzymes [BR:
leiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IT072_00425
Transfer RNA biogenesis [BR:
leiz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IT072_00425
Prokaryotic type
tRNA splicing ligases
IT072_00425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UAJ79613
LinkDB
All DBs
Position
complement(76908..78089)
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AA seq
393 aa
AA seq
DB search
MERISNRLLSWASLLEDSTRAQAVTTSRMPFIHPHLALMPDAHLGLGATVGSVIPTLGAV
MPAAVGVDIGCGMIAVKTQFTREDVAARASTRPLSELRRQIERAIPLSAGGRNNKVVATA
QPRVEELTRMADAIGLEPGAYAKAWELQLGSLGSGNHFIEVSLDEEDAVWLFLHSGSRGV
GNRIAGHHIRVAQELMSTWWIDLPDRDLAYLVEGTAEFDAYIAELRWAQHFALLNREEMM
DRVIRQVAEHFGMAVEERERINCHHNFTERERHFGKDVWLSRKGAISARPGQPGLIPGSM
GTASYVVSGLGNPLALHSSPHGAGRRFSRSAARKRFTIEELREAMTGIEFRDTDAFLDEI
PQAYKPIDQVMADAADLVEVRHTLRQIVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggagagaatctcgaaccgcctgctgagctgggcctccctgctggaggactccacgcgc
gcacaggcggtcaccacctcgaggatgccgttcatccacccgcaccttgccctcatgccc
gacgcccacctggggctcggcgcgacggtcggttccgtcatccccaccctcggcgcggtc
atgcccgccgccgtgggtgtggacatcggctgcgggatgatcgcggtgaagacgcagttc
acccgggaggacgtcgccgcacgcgcctccaccaggcccctgagcgaactgcgtcggcag
atcgagcgcgccatcccgctgtcggcgggcggccgtaacaacaaggtggtcgcgacggcg
cagccgcgtgtggaggagctgacccggatggccgacgcgatcggcctcgagccgggcgcc
tacgcgaaggcgtgggagctgcagctgggctcgctcggctcgggcaaccacttcatcgag
gtgagtctggacgaggaggacgccgtctggctgttcctgcactcgggctcccgcggcgtg
ggaaaccgcatcgcagggcaccacatccgcgtggcgcaggagctgatgtcgacgtggtgg
atcgatctgcccgaccgcgacctcgcctacctggtggagggaacggccgagttcgacgcg
tacatcgccgagctgcggtgggcgcagcacttcgcgctgctcaaccgcgaggagatgatg
gaccgcgtcatccgccaggtcgccgagcacttcggcatggccgtggaggagcgcgagcgg
atcaactgccaccacaacttcacggagcgcgagaggcacttcggcaaggatgtctggctc
tcccgcaagggcgcgatctcggcgaggccgggccagcccggactcatccccgggtcgatg
ggcacggcatcgtacgtggtgtcgggcctcggcaacccgctcgcgctgcactcgtcgccg
cacggagccggtcgccggttctcgagatcggcggcgcgcaagcgtttcacgatcgaggag
ctgcgggaggcgatgacagggatcgagttccgtgacacggacgcgttcctcgacgagatc
ccgcaggcctacaagccgatcgaccaggtgatggcggacgcggccgatctggtggaggtg
cgccacacgctgcgtcagatcgtcaacgtgaagggcgactga
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