KEGG   Leifsonia sp. ZF2019: IT072_12680
Entry
IT072_12680       CDS       T10186                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
leiz  Leifsonia sp. ZF2019
Pathway
leiz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:leiz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IT072_12680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:leiz03400]
    IT072_12680
Enzymes [BR:leiz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IT072_12680
DNA repair and recombination proteins [BR:leiz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IT072_12680
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_primase_S Rnk_N
Other DBs
NCBI-ProteinID: UAJ78131
UniProt: A0A9E6WYT8
LinkDB
Position
2606277..2608733
AA seq 818 aa
MAAEDTETVSIDGHRLKLTNLDKVMYPETGTTKADVIGYYHAIADVLIPHARDRIATRKR
WVHGVGTAEHPGEVFFQKNLDPSSTPSWVKQRTITHKTSTNTYPLVNDTATLVWLAQIAS
LEIHVPQWRVGRGDQRRNPDRMVLDLDPGDGATLADCAEVARLARDILGGMGLDPLPVTS
GSKGIHLYAPLDGSQTSDQVSAVAHELARALEADHPDLVVSDMKKALRSGKVLVDWSQNN
GAKTTIAPYSLRGRLRPTVAAPRTWRELASKELRHLEYQEVLERVSKRGDPLAALTAGGT
AEAGHPDADRIVISDAAAKSDRLTTYRSKRDAAKTPEPVPEVSPDAADGRSFVIQEHHAR
RLHWDFRLQHDGVLVSWALPKGPPDDPKQNHLAVHVEDHPLEYGTFAGDIPHGEYGAGHV
DIWDHGEYALEKWRDDEVIVTLTGQKDGGLGGVPRKFALIRTGGRDGDEKNWLIHLMKAD
GAGAAAKPGPAITDPPVSPMLATLGSEKDVDDEADWAFEMKWDGIRAIAVVRGGRLRLTT
RNGNDVTATYPDLAGLARLADGHDLVLDGEIVTLTPRGRPDFGLLQSRMGLTRAAEVAAA
AERAPAHYFVFDLLERDGHDLRRETYDDRRSALEEAVRPPGGDPVQVPPAFAGDLAHAVS
SSRELGLEGVMAKRRDSTYVSGRRTRSWIKIKHHLAQEVVIGGWTPGTGRRAGSLGALLL
GIPDGDTLRYVGKVGTGFSDADLDRLTKLLSAHPRKTSPLADVPSTDAPSAHWVRPEHVG
EVEFAEWTGTGRLRQPSWRGLRPDKSPDEVVREVGSSS
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggcagcggaggacaccgagaccgtctcgatcgacggccaccggctgaagctcacgaac
ctcgacaaggtgatgtatccggagacggggacgaccaaggcggacgtgatcggctactac
cacgcgatcgccgacgtgctcatcccgcacgcgcgcgaccggatcgctacccgcaagcgc
tgggtgcacggcgtcgggacggccgagcatcccggcgaggtgttctttcagaagaacctc
gatccgtcctccaccccgagctgggtgaagcagcggacgatcacgcacaagaccagcacg
aacacgtacccgctggtgaacgacacggcgacgctcgtctggctcgcgcagatcgcgtcg
ctggagatccacgtgccgcagtggcgggtcggccgcggcgaccagcgccgcaatcccgac
cgcatggtgctcgacctcgacccgggcgacggcgcgaccctcgccgactgcgcggaggtc
gcccggctggcgcgcgacatcctcggcgggatggggctggatccgctccccgtcacgagc
gggtcgaagggcatccacctgtacgccccgctcgacggctcccagacgagcgaccaggtc
tcggccgtcgcgcacgagctggcgcgagccctggaggccgaccatcccgacctcgtcgtc
agcgacatgaagaaggcgcttcgctcgggcaaggtgctcgtcgactggagccagaacaac
ggcgcgaagacgacgatcgcgccctactcgctgcgcggccggctgcggccgaccgtcgcc
gcgccgcgcacgtggcgggagctggcgtcgaaggagctgcgccacctcgaataccaggag
gtgctcgagcgggtgagcaagcggggagacccgctcgccgcgctgacggccggggggacc
gcggaggcggggcatcccgacgccgaccggatcgtcatctccgacgcagcggcgaagagc
gaccggctcacgacctaccggtcgaagcgggacgccgccaagacgcccgaaccggtgccg
gaggtcagccccgacgccgccgacggccggtccttcgtcatccaggagcaccacgcccgg
cgattgcactgggacttccgtctgcagcacgatggcgtgctcgtcagctgggccctcccg
aaggggccgcccgacgacccgaagcagaaccacctcgccgtccacgtcgaggaccacccg
ctcgaatacgggacattcgccggcgacatcccgcacggcgagtacggcgccgggcacgtc
gacatctgggaccacggcgagtacgcgctcgagaagtggcgcgacgacgaggtgatcgtc
accctcaccggccagaaggacggcggcctcggcggtgtgccgcggaagttcgcgctcatc
cgcaccggcggacgcgacggcgacgagaagaactggctgatccacctgatgaaggccgac
ggcgcgggcgcggcggcgaagccgggcccggccatcaccgatccgcccgtctcaccgatg
ctcgccaccctcggctcggagaaggatgtcgacgacgaggccgactgggccttcgagatg
aagtgggacggcatccgcgccatcgccgtcgtgcgcgggggccggctgcggctgacgacc
cgcaatggcaacgacgtcaccgcgacctacccggacctggccggactcgcccggctggcc
gacggccacgacctcgtgctggacggcgagatcgtcacgctcaccccccgcgggcgtccc
gacttcgggttgctgcagtcccgcatggggctgacccgggcggccgaggtggcggccgcc
gccgaacgtgcgccggcacactacttcgtcttcgacctcctggagcgggacggccacgac
ctgcgccgcgagacctacgacgaccgccgctcggcactcgaggaggccgtgcggccaccc
ggcggcgatcccgtgcaggtgcctcccgcgttcgccggggacctcgcccacgccgtgtcc
tcctcccgcgagctggggctggagggagtgatggccaaacgccgggacagcacctacgtc
tcggggaggcgcacccggtcctggatcaagatcaagcaccatctcgcccaggaggtggtc
atcggcgggtggacgcccggcaccggacggcgcgccgggtcgctgggcgcgctgctgctc
ggcatcccggacggcgacaccctccgttacgtcggcaaggtcggcaccggcttctccgac
gcggacctcgaccgcctcacgaaactcctctccgcgcacccccggaagaccagcccgctg
gcggacgtgccctcgaccgacgcccccagcgctcactgggtgcgcccggagcacgtcggc
gaggtggagttcgccgagtggacgggcaccggccggctccgccagccgtcgtggcgcggt
ctccggcccgacaagtcgccggacgaggtcgtacgggaggtaggatcgtcgtcgtga

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