Leifsonia sp. ZF2019: IT072_14075
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Entry
IT072_14075 CDS
T10186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leiz Leifsonia sp. ZF2019
Pathway
leiz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IT072_14075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leiz03400
]
IT072_14075 (mfd)
Enzymes [BR:
leiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IT072_14075 (mfd)
DNA repair and recombination proteins [BR:
leiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IT072_14075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UAJ78384
UniProt:
A0A9E7BIL7
LinkDB
All DBs
Position
complement(2862994..2866608)
Genome browser
AA seq
1204 aa
AA seq
DB search
MILQGLITALQRASTFADALTYASRDADFSLTEGLRAPLLAGLIRRRAEQDSSQAVLVVT
ATGRESEAVRAALPCVLPDAEIVEFPAWETLPHERLSPSAEIVGKRLTALRRLVDWGAGE
RRTPFVLVASVRAALQPLADNLTDYATVDLTAGGRGFDLAGLAAQLVDLAYARVDMVTRR
GEFAVRGGILDVFPPTANHPYRVDFFGDEVEQIRAFSVADQRSLPEPIPSVALPPSRELL
LSESVRQRAREMEHEFPSLSGMLAKIGEGIPVEGMESLAPALVDRLVPLTHYLPDGAAVA
VFSPERVASRAVSLAETNREFLSAAWSAATVGAAAPIDLAAGDFLTLQTLHDSVKFSRPG
APAPDHPWWTMSGFQTDDVLPEHRELEEHLQVRIAADAVPSFQGNVSGAVGHVAARLREG
WRVAVVAEGNGLVERAAQVLGEAELPARPVDQFPVDAEPGVAYLLKANVEHGFEVPEIKL
AVVGESEFYGRTIGYDSRQVKKLAARRKNVVDPMQLKPGDFVVHETHGIGKFVELTQREV
SSGGRNAVKSKREYLVLEYAPSKRGYPGDKLYVPTDQLDLLSRYVGGEAPQLSKMGGSDW
AAAKGRARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQHELEEAFPFAETHDQLQTID
EVKADMERPIPMDRLISGDVGFGKTEIAVRAAFKAIQDGKQVAMLVPTTLLVKQHAETFL
ERFAGFPVHLRQLSRFQTDKEARETLAGLADGTVDIVIGTHRILADGVTFKDLGLVIIDE
EQRFGVEHKDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFV
GPYSEKQVAAAIRRELLREGQVFFVHNRVGSISAAAAKIAELVPEARIGVAHGKMNEHAL
EQVVVDFWERKFDVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRGRERA
YAYFLWDENKPLSETAHDRLSTIAANNDLGSGMQVALKDLEIRGAGNLLGGEQSGHIAGV
GFDLYLRMIGEAVSTFRGEVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSAASA
PTSKDGQIDLVVEELSDRYGEPPVPVLNLVAVSRLRRHAQKAGLGEVVAMGSNLRLAPAL
LPDSLQVRLQRMYPGSKYHAAPKVATVPLPRVNGEPLDDSALIEWVSTLLGALFPLPEPA
PEPA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtgatactccagggcttgatcacggcgcttcagcgcgcctccacgttcgctgacgcgctc
acgtatgcttcgcgcgacgccgacttctcgctcacggaggggctgcgtgcaccgctgctc
gccggactcatccgacgccgcgcggagcaggattcgtcccaggccgtcctggtcgtcacg
gcgaccggccgcgagtcggaggcggtcagggccgccctgccgtgcgtgctccccgatgcc
gagatcgtcgagttccccgcctgggagacgctcccgcacgagcggttgagcccgagcgcc
gagatcgtcggcaagcggctcaccgccctccggcggctcgtcgattggggagcgggggag
cgtcgcacgcccttcgtgctcgtcgcgtcggtgcgcgcggccctgcagcccctcgccgac
aacctcaccgactacgccaccgtcgacctgacggccggcggtcgcgggttcgacctcgcc
ggcctcgccgcgcagctggtcgacctcgcctacgcgcgggtcgacatggtgacccggcgc
ggcgagttcgccgtgcgcggcggcatcctcgatgtcttcccgcccaccgccaaccacccg
taccgggtcgacttcttcggcgacgaggtggagcagatccgcgccttctcggtggccgac
cagcggtcgctgcccgagcccatcccgtcggtggccctgccgccgagccgcgagctgctg
ctcagcgagtcggtgcgccagcgggcgcgagagatggagcacgagttccccagcctctcc
ggcatgctcgccaagatcggcgagggcatcccggtggagggcatggagtcgctggccccg
gcgctggtcgaccgcctggtgccgctcacgcactacctgcccgacggggccgccgtcgcc
gtcttctcgccggagcgcgtcgcctcccgcgccgtcagcctcgccgagacgaaccgtgag
ttcctgtcggccgcgtggagtgcagccacggtgggcgccgcagcgccgatcgacctcgcc
gccggtgacttcctcacgctccagaccctccacgactcggtgaagttcagccggccggga
gctcccgcacccgaccatccgtggtggaccatgagcggcttccagacggatgacgtgctg
ccggagcaccgcgaactcgaggagcacctccaggtccgcatcgccgccgacgccgtgccc
agcttccagggcaacgtctcgggcgcggtcggccacgtcgcggcgcggctgcgcgagggc
tggcgggtcgccgtcgtcgccgagggcaacggcctcgtcgagcgcgccgcgcaggtgctg
ggcgaagccgagctgcccgcgcgcccggtcgaccagttccccgtcgatgcggagcccggc
gtcgcctacctgctcaaggccaacgtggagcacggcttcgaggtgcccgagatcaagctc
gccgtcgtgggcgagagcgagttctacggccgcacgatcggctacgactcgcggcaggtc
aagaagctcgccgcgcgccgcaagaacgtcgtcgacccgatgcagctgaagcccggcgac
ttcgtcgtgcacgagacgcacggcatcggcaagttcgtcgagctgacccagcgcgaggtc
tccagcggcggccgcaacgcggtcaaatccaagcgcgagtacctggtgctcgagtacgcc
ccgtccaagcgcggctaccccggcgacaagctctacgtgccgaccgaccagctcgacctc
ctcagccgctacgtcggcggcgaggccccgcagctcagcaagatgggcggcagcgactgg
gcggccgcgaagggccgcgcccgcaaggccgtgcgcgacatcgcggtggagctcgtcaag
ctctactccgcccgcatggcctccaagggccacgcgttcgggccggacacgccctggcag
cacgagctggaggaggcgttcccgttcgccgagacgcacgaccagttgcagaccatcgac
gaggtgaaggccgacatggagcggcccatcccgatggaccgactcatctcgggcgacgtc
ggcttcggcaagaccgagatcgccgtgcgtgcggcgttcaaggccatccaggacggcaag
caggtcgccatgctcgtcccgaccacgctgctggtgaagcagcacgcggagacgttcctc
gagcgcttcgccggcttcccggtgcatctgcgccagctgagccgcttccagaccgacaag
gaggctcgggagaccctcgccggcttggccgacggcaccgtcgacatcgtcatcgggacg
caccgcatcctcgccgacggggtcaccttcaaagacctgggcctcgtcatcatcgacgag
gagcagcgcttcggcgtcgagcacaaggaccagctgaagaagctgaagaccaacgtcgac
atcctggcgatgagcgcgacgcccattcctcgcacactcgagatggcggtgaccgggatc
cgcgagatgtcgacgctcgcgacgcctcccgaggaccgccacccgatcctgaccttcgtc
ggcccgtactccgagaaacaggtcgccgcggccatccggcgcgagctgctgcgggagggc
caggtgttcttcgtgcacaaccgggtcggctcgatctcggccgcggcggcgaagatcgcc
gaactcgttccggaggcgcgcatcggcgtcgcccacggcaagatgaacgagcacgcgctc
gagcaggtcgtcgtcgacttctgggagcgcaagttcgacgtgctggtgtcgacgaccatc
atcgagacggggctcgacatcgcgaacgccaacaccatcatcatcgaccgcgccgacaag
tacgggctcagccagctgcaccagctgcgcggtcgtgtcggccgcgggcgggagcgcgcg
tacgcgtacttcctctgggacgagaacaagccgctcagcgagaccgcacacgaccgcctc
tccaccatcgccgcgaacaacgacctcggcagcggcatgcaggtcgcgctcaaggacctc
gagatccgcggagcgggcaacctgctcggcggtgagcagtccggccacatcgccggtgtg
ggcttcgacctctacctgcgcatgatcggcgaggccgtgtcgacgttccgcggcgaggtc
gcggaggggcagaccgagttgcggctggagctgcccgtcgacgcccacatccccgaggag
tacgtcgacagcgagcgcctgcgtctcgaggcctatcagaagctgtcggccgcgagcgcg
ccgacgtcgaaggacggccagatcgatctcgtcgtcgaggagctctccgaccgctacggc
gagccgcccgtcccggtgctcaatctcgtcgccgtctcgcgcctgcgccggcacgcgcag
aaggcgggcctcggcgaggtcgtcgccatgggctccaacctgcgactcgcccccgcgttg
ctgccggactccctgcaggtgcggctgcagcgcatgtaccccgggtcgaagtaccacgcg
gcccccaaggtcgcgaccgtccctctcccgcgtgtcaacggcgagcccctcgacgactcc
gccctcatcgagtgggtctccaccctcctcggcgccctcttccccctccccgagcccgcc
cccgaacccgcctga
DBGET
integrated database retrieval system
