Leifsonia sp. ZF2019: IT072_14470
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Entry
IT072_14470 CDS
T10186
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
leiz Leifsonia sp. ZF2019
Brite
Enzymes [BR:
leiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IT072_14470 (hrpA)
Messenger RNA biogenesis [BR:
leiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IT072_14470 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UAJ78457
UniProt:
A0A9E7BMJ9
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Position
2952284..2956138
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AA seq
1284 aa
AA seq
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MSATSTLPRITFPPELPVSQKRDDIARAIRESQVVIVAGETGSGKTTQLPKICLELGRTS
IGHTQPRRIAARTIAERIAEELGQSVGELVGYQVRFTDRVSADTRIKLMTDGILLNEIHR
DRLLRKYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPESFAAHFAAA
DGTPAPIVEVSGRTFPVEIRYRPLVAEAMEDEDDPDPVPGADRDYLQGINDALDELAREA
PGDVLVFLSGENEIRDAADAIRGRALPGTEVLPLYGRLSAAEQHRVFQPSSTPGVRRRVV
LATNVAETSLTVPGIKYVVDAGTARISRYSTRAKVQRLPIEAVSQASANQRSGRSGRTSD
GIAIRLYSQEDFEKRPEFTEPEILRTNLAAVILQMISLGLGDIAAFPFLTPPDSRGIKDG
LDLLTELGAITTARGGDPALTKVGRSLSLLPIDPRFARMVVESKRHGTSREVMAIVAGLT
IQDPRERPVEKRGSADEKHARFADPTSDFLTLLNLWNYLEEQQKELSSSAFRRLCKAEYL
NFLRVREWQDVYRQLRQLAKPLGLTIGEASVNPDGIHRSLLAGLLSHIGLKDQRESGNKG
GARTRQSEYLGARQARFVIFPGSTLAKKQPNALMSAELVETSRLFARMNAAIDPAWAEPI
AGDLCKRQYSEPHWEKNQGSVVAFEKVTLFGVPIIPRRRVQYSRIDAPLSRELFIRHALV
DGEWDSHQAFDRANRKLRAELRELEERTRRRDILNDDETVFEFYDKRIPADVVSTRTFEG
WWKKARNETPDLLTMTPESLLDEDAAEVDEEAFPPVWRQGDQRLTLRYRFEPGAEDDGVT
VQVPLPLLAGLLPDGFDWQVPGLRHELVTALIKSLPKAIRRQVVPAADWAQRLLGELSTT
TGMRAHEGERPAASLTDTLAATISRLTGSRVSGTDFDTERLPAHLRPTFQVIGERGRPLA
SGKDLGALQERLRSRARDSVARVAEARTPDAIERTGLTTWDLDELPRFLDSTHEGPGGSS
NTIRAYPALVDDGQSVSIRLMSTPADQARAMPGGVRRLLLASIPSPVAYVQQHLTANEKL
TLAASPYPNTKALFDDCLLAVIDSVLYRMKPDGQVFMRAEFEAVRDRVSGIVMDAMFETV
ALVTRILTAARAAEKTIGGATSLVFLASLNDAKAQLAGLVYPGFVSATGLEQLRHLPRYL
AGISQRIQALPVNPGRDRAWQTQVETAVALYTDAGGRIPLAPHSPPHLVHARWMLEEFRV
SLFAQSLGTAESVSLQRIRKVLAG
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgacctccaccctcccccgcatcacgttcccgcccgagctgccggtcagccag
aagcgggacgacatcgcgcgcgccatccgcgagagccaggtcgtgatcgtggccggcgag
accggctcgggcaagacgacgcagctgccgaagatctgcctggagctgggacgcacctcc
atcggccacacccagccgcgccggatcgccgcgcgtacgatcgccgagcgcatcgccgag
gagctcggccagtcggtcggcgagctggtgggctaccaggtgcggttcacggaccgggtc
tccgccgacacccgcatcaagctgatgaccgacggcatcctgctcaacgagatccaccgc
gaccggctgctgcgcaagtacgacaccatcatcatcgacgaggcgcacgagcgcagcctc
aacatcgatttcctactcggctacctgcgcgagctgctgccgaagcgccccgacctgaag
gtgatcatcacctcggcgaccatcgacccggagagcttcgccgcccacttcgccgcggcc
gacggcacccccgctccgatcgtcgaggtgtcgggacgcaccttcccggtcgagatccgc
taccggccgctggtcgcggaggcgatggaggacgaggacgatccggatcccgtccccggc
gccgaccgtgactatctgcagggcatcaacgacgccctcgacgagctggctcgcgaggca
ccgggtgatgtgctggtcttcctctcgggcgagaacgagatccgggacgcggcggacgcg
atccgcggccgcgccctccccggcacggaggtgctccccctctacggccggctctcggcg
gccgagcagcaccgggtgttccagccgtcgtcgacgccgggcgtgcgtcgccgcgtcgtg
ctcgccaccaatgtcgccgagaccagcctcaccgtgcccgggatcaagtacgtggtggat
gccggaaccgcccgcatcagtcggtacagtacgcgcgccaaggtgcagcgcctcccgatc
gaggcggtctcgcaggccagcgccaaccagcgctccggccgctcgggccgcaccagcgac
gggatcgcgatccggctgtactcgcaggaggacttcgagaagcggccggagttcaccgag
ccggagatcctgcgcaccaacctcgcggcggtcatcctgcagatgatctcgctcgggctc
ggcgacatcgcggccttcccgttcctcacccctcccgactcgcgcggcatcaaggacggc
ctggacctgctgacggagctcggcgcgatcaccaccgcgcgcggcggcgacccggcgctc
acgaaggtcgggcgttcgctctccctgctcccgatcgatccccgtttcgcccggatggtc
gtcgagtccaagcggcacggcacctcccgcgaggtgatggcgatcgtcgccgggctcacc
atccaggacccgcgcgaacgacccgtcgagaagcgcggcagcgccgacgagaagcacgcc
cgcttcgccgacccgacgagcgacttcctcaccctgctcaacctctggaactacctcgag
gagcagcagaaggagctgtcgtcgagcgcgttccgccggctctgcaaggccgagtacctc
aacttcctccgggtgcgcgagtggcaggacgtctaccgtcagctgcgccagctcgccaag
ccgctcgggttgacgatcggcgaggcctcggtgaacccggacggcatccaccgctcgctg
ctcgccgggctgctctcgcacatcgggctgaaggatcagcgcgagtcgggcaacaagggc
ggggcgcgcacccggcagtccgagtacctcggcgcccgccaggcccggttcgtgatcttc
cccggctccaccctggccaagaagcagccgaacgcgctgatgagcgccgagctggtcgag
accagccgcctcttcgcccggatgaacgccgccatcgatccggcctgggccgagccgatc
gccggcgacctctgcaagcggcagtacagcgagccgcactgggagaagaaccagggctcc
gtcgtcgcgttcgagaaggtcaccctgttcggggtgccgatcatcccgcgccggcgcgtc
cagtactcccggatcgacgcaccgctgtcgcgggagctgttcatccgccacgcgctcgtc
gacggcgagtgggactcccaccaggcgttcgaccgggcgaaccggaagcttcgcgcggag
ctgcgcgagctggaggagcgcacccggcggcgcgacatcctcaacgacgacgagacggtc
ttcgagttctacgacaagcgcatcccggccgacgtcgtctccacgcgcaccttcgagggc
tggtggaagaaggcgaggaacgagacccccgacctgctcaccatgaccccggagtcgctc
ctggacgaggatgcggccgaggtcgacgaggaggccttcccgccggtgtggcgtcagggc
gaccagcgcctcactctgcgctaccggttcgagccgggcgccgaggacgacggggtgacc
gtgcaggtgcccctgccgctgctcgccggtctgctgcccgacggcttcgactggcaggtc
cccggcctccgacacgagctggtcacggcgctcatcaagtcgctgccgaaggcgatccgc
cggcaggtggtgcccgcggccgactgggcgcagcgcttgctcggcgagctctcgacgacg
acggggatgcgcgcccacgagggcgagcgccccgcggcctccctcaccgacaccctcgcg
gcgacgatctcacgcctcaccggctcgcgggtcagcgggacggacttcgacaccgagcgg
ctcccggcgcacctgcggccgacgttccaggtgatcggagagcgcggccgcccgctggcg
agcggcaaagacctcggtgcactgcaggagcgtctgcggtcgcgcgcccgggactcggtg
gcgcgggtggccgaggcccgcacgccggacgcgatcgagcgcaccgggctcacgacctgg
gacctcgacgagctcccgcgcttcctcgacagcacgcacgaaggccccgggggctcgtcc
aacaccatccgcgcctaccccgcgctcgtggacgacggtcagagcgtgtccatccggctg
atgagcaccccggccgatcaggcgagagccatgcccggcggcgtgcggcggctgctgctc
gcgagcatcccctcgcccgtcgcgtacgtgcagcagcacctcaccgcgaacgagaagctg
acgctcgccgcgagcccctacccgaatacgaaggcgctcttcgacgactgcctgctcgcg
gtcatcgactcggtgctctaccggatgaagccggacggccaggtcttcatgcgcgccgag
ttcgaggccgtgcgcgaccgcgtctcgggcatcgtgatggacgcgatgttcgagaccgtc
gcgctggtcacgcgcatcctcaccgcggcgcgggcggcggagaagacgatcggcggcgcc
acgtcgctcgtgttcctcgcctccctcaatgacgcgaaggcgcagctggccggcctggtc
tatcccggcttcgtctcggcgaccgggctggagcagctgcggcacctgcctcgctacctc
gccggcatcagccagcgcatccaggcgctcccggtgaatccgggccgcgaccgtgcgtgg
cagacccaggtggagaccgcggtggcgctgtacacggacgccggcgggcgcatcccgctc
gccccgcacagcccgccccacctcgtgcacgcgcgctggatgctcgaggagttccgcgtc
tcgctgttcgcccagtccctcgggaccgccgagtccgtctccctccagcgcatccgcaaa
gtcctcgccggctag
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