Leisingera sp. NJS204: ETW24_06440
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Entry
ETW24_06440 CDS
T05817
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lej
Leisingera sp. NJS204
Brite
KEGG Orthology (KO) [BR:
lej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lej03019
]
ETW24_06440 (hrpB)
Enzymes [BR:
lej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ETW24_06440 (hrpB)
Messenger RNA biogenesis [BR:
lej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ETW24_06440 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
CON_HrpB
AAA_19
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QAX29028
LinkDB
All DBs
Position
complement(1317582..1320059)
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AA seq
825 aa
AA seq
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MTRLPIEDALPELLDALRGHRRAVLQAPPGAGKTTRVPLAMLEAALTQGRIVMLEPRRLA
ARAAAERMAETLGEKPGQTVGYRVRGDAKVSRSTRIEVVTEGILTRMLQSDPDLPGIGAV
IFDEFHERSLNADLGLALCLEVAGALRDDLILMAMSATLDAEPVAALMDAPMVTSEGRSY
PVETRWLERPLPAQARRGDALADLVVQAERDTRSAGRDQGGGILVFLPGEGEIRRAAGAL
AKRLPGHCHIRPLFGALPFAEQRAAIQPEKEGRKVVLATSIAETSLTIQDIRVVVDMGQS
RRARFDPGSGMSRLVTEKVTRAEATQRQGRAGRVAKGVCYRLWTKGEEGALMGFAPAEIE
SADLTDLALELALWGAAPEDLSFLSPPPAGALSEAQALLQMLGALTAQGRITEHGKALSS
LPLHPRLGHMLLTAGPAAAPLAALLSERDPLRGAPADLLLRLKALKDPKGFERARPYQLN
RPVVERIKSEARRLEQQAGRGTGNVTGTGMLSPAAMAALAYPDRIGQRRKGDAPRFVLSG
GKGAVLESSDTLAGAPFIVALDTDGNPREARIRMAAQISQSEIRELFADQIAWDDMCEWS
KRDRRVTARQQERLGAVVLDDRIWNDVPPDAVARAMLDGVRDLGLRLTGAAARLAARVEL
VRGEGHDLPDFSLPGLTDTLEDWLLPMLDGVKSAGDWKRFDLLPALRAALNWEQTQLLDR
EAPGSFITPLGRKIPISYDGEVPEISVRLQELFGVSRHPCVGGVPLKIALLSPAQRPIQI
TRDLPGFWAGSYADVRKDMRAQYPRHPWPEDPTQEDPTLRAKRRK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaccagattgccgatcgaagacgccctccccgaactgctggacgccctgcgcggccat
cgccgtgccgtgctgcaggcgccgccgggtgcaggcaagaccacgcgggtgccgctggcg
atgctggaggcggcgttgacccagggccgcattgtgatgctggaaccccgccgcttggcc
gcccgcgccgccgccgaacggatggcggaaacgctgggcgagaaacccggccagaccgtc
ggctatagggtgcgaggcgatgccaaggtttccaggtccacccggatcgaggtggtgacc
gagggcatcctgacccggatgctgcagtcggacccggacctgcccggcatcggcgcggtg
atctttgatgaattccacgaacgctcgctgaacgccgatctggggcttgccctgtgtctt
gaggtggcgggcgccctgcgcgatgacctgatcctgatggcaatgtcggcaacgctggac
gcggaaccggtggcggcgctgatggacgcaccgatggtcacctccgaggggcgcagctat
ccggtggagacgcgctggctggaacgccctctgcctgcccaggcccggcgcggcgatgca
ctggcggatctggtggtgcaggcggaaagggacacccgcagcgcaggccgggatcagggc
ggcggcattctggtgtttctgcccggcgagggcgaaatccgccgcgccgccggtgccttg
gccaaacgcctgcccggccattgccatatccgccccttgttcggcgccctgccctttgcc
gagcagcgcgccgccattcagcccgagaaggaagggcgcaaggtggtgctggcaacctcg
attgccgaaacctcgctgaccattcaggatatccgggtggtggtggatatggggcagtcc
aggcgggcgcggtttgaccccggctccggcatgtcgcggctggtgaccgagaaagtgacc
cgcgccgaggccacccagcgccagggccgagcaggccgggtggccaagggcgtctgctac
cggctgtggaccaagggcgaagaaggcgcgctgatgggtttcgccccggccgagattgaa
agcgccgaccttacggatctggcgctggagctggcattgtggggggcagcgccggaggat
ctgtcgttcctcagcccgccgcctgccggcgcgctgagcgaagcgcaagcgctgctgcag
atgctgggcgcgttgaccgcgcaggggcggatcaccgaacacggcaaggcgctctcatcc
ctgccgctgcatccccgccttggccacatgctgctgaccgccggcccggctgcggcgccg
ctggcagccctcttgagcgagcgcgacccgctgcgcggggcccctgccgatctgttattg
cggctgaaggcgctaaaggatcccaaggggtttgaacgcgcccgcccctatcagctgaac
cgcccagtggtggaacggatcaaaagcgaggcccggcggttggaacagcaggccgggcgc
ggcaccggtaatgttacgggtactggcatgctgtccccggcagcgatggccgcgttggcc
tatcccgaccgcatcgggcagcggcgcaagggcgacgcgccgcggtttgtgctgtccggc
ggcaagggcgcggtgctggaaagcagcgacacgctggcgggcgcgcctttcatcgtggcg
ctggacaccgacggcaacccgcgtgaagccaggatccggatggcggcgcagatctcccaa
agcgaaatccgcgaactgtttgcggatcagatcgcttgggatgatatgtgcgagtggtcc
aagcgtgaccgccgggtgacggcccgccagcaggagcggctgggtgccgtcgtgctggat
gaccggatctggaatgacgtgccgccggacgcggtggcgcgggcgatgctggacggcgtg
cgcgacctcggcctgcggctgaccggcgccgcggcgcggcttgccgcacgggtggagctg
gtgcgcggcgaaggacatgatttgccggatttctccctccccggcctgacggatacgctg
gaagactggctgctgccgatgttggacggggtgaaatctgccggggactggaaacgtttc
gacctgctgcccgcgctgcgtgccgccctcaactgggagcagacgcagcttctggaccgc
gaggcgccgggcagtttcatcacgccgctggggcgcaagatcccgatcagctatgacggt
gaagtgccggaaatctccgtccgcctgcaggagctgttcggcgtcagccgccacccatgc
gtgggcggcgttccgctgaagatagcccttttgtccccggcacagcgcccgattcaaatc
acccgcgacctgccaggtttttgggcggggtcatacgcggacgtccgcaaggacatgcgc
gcgcaataccccaggcacccctggcccgaggaccccacacaggaagatccgacattgcgg
gcaaaacggcgcaaatag
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