Leisingera sp. NJS204: ETW24_11560
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Entry
ETW24_11560 CDS
T05817
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lej
Leisingera sp. NJS204
Pathway
lej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETW24_11560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lej03019
]
ETW24_11560
Enzymes [BR:
lej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETW24_11560
Messenger RNA biogenesis [BR:
lej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETW24_11560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Helicase_RecD
AAA_19
Fe-ADH
ERCC3_RAD25_C
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QAX31734
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All DBs
Position
2359905..2361206
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AA seq
433 aa
AA seq
DB search
MGLPEKLLTRLQDLGLNDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMMQ
YGRKPAANTVRGLVLAPTRELANQIAATLKGLTENTPMKVGLVVGGVSINPQISRIAKGT
DILVATPGRLIDILDRGALDLGSCDFLVLDEADQMLDLGFIHTLRKIAALLPAERQTMLF
SATMPKQMNEIANSYLQSPVRIEVSPPGKAADKVTQSVHFIAKAEKLSLLKELLADHKDE
RALVFGRTKHGMEKLMKVLDKAGFAAAAIHGNKSQGQRERALAAFKSGDIKVLVATDVAA
RGLDIPDVKHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCSPDEMEELKAIQKVMKT
TIPVASGRAWEALPDPAAAGKPGGRPGARRGGGGFGGGKPGGQRRRGGGGSGGQGKPQGA
SNGQRGGQKQRAR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggggcttcctgaaaagctcctcacccggctccaggacctgggcctcaatgaccccacc
ccgatccaggcccgcgccattccgcatgcgctgaacggccaggacgttctgggtctcgcg
cagaccggcaccggcaagaccgccgcatttggcgtgccgctgatcgcgcagatgatgcaa
tacggccgcaagcccgctgccaacaccgtgcgcggcctggtgctggcgccgacccgcgaa
ctggccaaccagatcgcagcgaccctgaaaggcctcaccgaaaacaccccgatgaaggtc
ggcctggttgtcggcggcgtgtccatcaacccgcagatctcccgcatcgccaagggcacc
gacatcctggttgccacaccgggccgcctgattgacatcctcgatcgcggcgcactggat
ctcggctcctgcgacttcctggtgctggacgaggccgaccagatgctggacctcggcttc
atccacactctgcgcaagatcgcggcgctgctgccggccgagcgccagaccatgctgttc
tcggccaccatgcccaagcagatgaacgagatcgccaactcctacctgcaaagcccggtc
cgtatcgaagtctcgcctccgggcaaagccgccgacaaggtcacccaatcggtgcatttc
atcgccaaggccgaaaagctgagcctgctcaaagagctgctggccgaccacaaggacgag
cgcgcactggtcttcggccgcaccaaacacggcatggaaaagctgatgaaggtgctggac
aaggcaggctttgccgccgctgccattcacggcaacaaatcccagggccagcgcgagcgc
gcccttgccgcctttaaatccggcgacatcaaggttctggtcgccaccgatgtggccgcc
cgagggctggacattccggacgtgaaacacgtctacaactacgagctgcccaatgtgccg
gacgcctatgtgcaccgtatcggccgcaccgcgcgcgcgggcaaggatggcgctgccatc
gccttttgctcaccggatgaaatggaagagctgaaggcgatccagaaggtgatgaaaacc
accatccccgtcgcctcgggccgcgcctgggaggctttgccggatccggcagcggccggc
aaacccggcggccgtcctggcgcacgccgcggcggcggcggtttcggcggcggcaaaccc
ggcggccagcgccgccgcggcggcggtggctcgggcggccaaggcaagccccagggcgca
agcaacggccagcgcggcggccaaaaacagcgcgcgcgctaa
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