Leisingera sp. NJS204: ETW24_12675
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Entry
ETW24_12675 CDS
T05817
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lej
Leisingera sp. NJS204
Pathway
lej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETW24_12675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lej03019
]
ETW24_12675
Messenger RNA biogenesis [BR:
lej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETW24_12675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QAX30144
LinkDB
All DBs
Position
complement(2574520..2576187)
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AA seq
555 aa
AA seq
DB search
MSSERLIYLPLGGAGEIGMNAYVYGYGPKNKERLILVDLGVTFPDMDTTPGVDLIMPDMT
WLKERVDRLEGIFVTHGHEDHIGAIAHMYSSLNVPVYARAFTANLARRKMEEAGHDPANV
HTVEAWPEVTKLGPFTIGVAPMSHSIPESGALVIDSPAGRVVHTGDFKLDSNPLVGEPFD
PEMWAEIAKDGIQTLVCDSTNVFSTHPGRSESELPDEITRLISEAKGLVAATTFASNVAR
VKTLAEAGVRAGRSIVLLGRAMRRMIEAATETGVLTDFPKVISPEDANNVPRDNLMLITT
GSQGERRAASAQLARGKYRGLELKEGDTFLFSSKTIPGNEKGVIRIINQFSEMGVDVVDD
SSGLYHVSGHANGPDLETMHTLLKPRMLVPMHGEHRHLRQHARLGEAKGIASAVVVNGMM
MDLGGDAPKSAGYVDTGRTYLDGSVKYGAMDGVVRDRIRMALNGHVVVTVLLDEQDEPLG
EPWCDVKGLPETGSSNAALVEIMEADLNQFLMRAGAKTLRDEEKLEQELRRIARQSAHSE
IGKKPEVTVVVSRMR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgaaagattgatctatctgcccctcggcggggcgggtgaaattggcatgaat
gcctatgtctacggctacgggccgaagaacaaggaacgcctgatcctggtcgacctgggc
gtaaccttccccgatatggacaccacccccggcgttgatctgatcatgccggacatgacc
tggctgaaagagcgggtagaccggctggaggggattttcgtcacccacgggcacgaggac
cacatcggcgccatcgcgcatatgtattccagcctgaatgtgccggtctacgcccgtgct
ttcaccgccaatctggcgcggcgcaagatggaggaggcgggtcacgatccggccaatgtg
cacacggtcgaagcctggccggaagtgaccaagctgggtcccttcaccattggcgtcgcc
ccgatgagccactcaatccccgaaagcggcgcgctggtgattgacagcccggcagggcgg
gtggtgcatactggcgacttcaagctggattccaatccgctggtcggcgaaccgtttgat
ccggagatgtgggcagagatcgccaaggacggcatccagacgctggtctgcgattctacc
aatgtgttctccacccatccgggccgctcggaatcagagctgccggatgagatcacccgg
ctgatttccgaggccaagggcctggttgccgccaccacatttgcctccaacgtggcccgt
gtgaaaaccctggctgaagccggggtgcgggccgggcggtccattgtgctgctgggccgg
gcgatgcgccggatgatcgaggcggcaacggaaaccggcgttttgacggacttccccaag
gtgatcagccccgaagacgcaaacaatgtgccgcgcgacaatctgatgctgatcacaacc
ggcagccagggcgagcgccgtgcggcctccgcgcagctggcgcgcggcaaataccgcggg
ctggagctgaaggagggcgacaccttcctgttctcctcaaagaccatcccgggcaatgaa
aagggcgtgatccgcattatcaaccagttctctgaaatgggtgtggatgtggttgatgac
agctccggcctttaccatgtgtcggggcacgccaatgggccggatctggaaaccatgcat
accctgctgaagcccagaatgctggtgccgatgcacggcgagcaccgccatttgcgccaa
cacgcccgcctgggcgaggcaaagggcattgccagcgcggttgtggtcaacggaatgatg
atggacctcggcggcgacgcgcccaagtccgccggctatgtcgataccggccgcacctat
ctggacggatctgtcaaatacggtgcgatggacggtgttgtccgcgaccgtatccgcatg
gcgctgaacggccatgtggtggtgacagtgctgctggacgagcaggacgaaccgctgggc
gagccctggtgcgacgtcaagggcctgcctgagaccggcagttctaacgccgccctggtc
gagataatggaagcggatctgaaccagttcctgatgcgcgccggtgccaagacgctgcgc
gatgaggagaagctggaacaggagctgcgccgtattgcccgccaaagcgcccatagcgag
atcggcaaaaaacccgaggtgacggtggtcgtcagccgcatgcgctga
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