KEGG   Leisingera sp. NJS204: ETW24_12675
Entry
ETW24_12675       CDS       T05817                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lej  Leisingera sp. NJS204
Pathway
lej03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lej00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ETW24_12675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lej03019]
    ETW24_12675
Messenger RNA biogenesis [BR:lej03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ETW24_12675
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: QAX30144
LinkDB
Position
complement(2574520..2576187)
AA seq 555 aa
MSSERLIYLPLGGAGEIGMNAYVYGYGPKNKERLILVDLGVTFPDMDTTPGVDLIMPDMT
WLKERVDRLEGIFVTHGHEDHIGAIAHMYSSLNVPVYARAFTANLARRKMEEAGHDPANV
HTVEAWPEVTKLGPFTIGVAPMSHSIPESGALVIDSPAGRVVHTGDFKLDSNPLVGEPFD
PEMWAEIAKDGIQTLVCDSTNVFSTHPGRSESELPDEITRLISEAKGLVAATTFASNVAR
VKTLAEAGVRAGRSIVLLGRAMRRMIEAATETGVLTDFPKVISPEDANNVPRDNLMLITT
GSQGERRAASAQLARGKYRGLELKEGDTFLFSSKTIPGNEKGVIRIINQFSEMGVDVVDD
SSGLYHVSGHANGPDLETMHTLLKPRMLVPMHGEHRHLRQHARLGEAKGIASAVVVNGMM
MDLGGDAPKSAGYVDTGRTYLDGSVKYGAMDGVVRDRIRMALNGHVVVTVLLDEQDEPLG
EPWCDVKGLPETGSSNAALVEIMEADLNQFLMRAGAKTLRDEEKLEQELRRIARQSAHSE
IGKKPEVTVVVSRMR
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcagtgaaagattgatctatctgcccctcggcggggcgggtgaaattggcatgaat
gcctatgtctacggctacgggccgaagaacaaggaacgcctgatcctggtcgacctgggc
gtaaccttccccgatatggacaccacccccggcgttgatctgatcatgccggacatgacc
tggctgaaagagcgggtagaccggctggaggggattttcgtcacccacgggcacgaggac
cacatcggcgccatcgcgcatatgtattccagcctgaatgtgccggtctacgcccgtgct
ttcaccgccaatctggcgcggcgcaagatggaggaggcgggtcacgatccggccaatgtg
cacacggtcgaagcctggccggaagtgaccaagctgggtcccttcaccattggcgtcgcc
ccgatgagccactcaatccccgaaagcggcgcgctggtgattgacagcccggcagggcgg
gtggtgcatactggcgacttcaagctggattccaatccgctggtcggcgaaccgtttgat
ccggagatgtgggcagagatcgccaaggacggcatccagacgctggtctgcgattctacc
aatgtgttctccacccatccgggccgctcggaatcagagctgccggatgagatcacccgg
ctgatttccgaggccaagggcctggttgccgccaccacatttgcctccaacgtggcccgt
gtgaaaaccctggctgaagccggggtgcgggccgggcggtccattgtgctgctgggccgg
gcgatgcgccggatgatcgaggcggcaacggaaaccggcgttttgacggacttccccaag
gtgatcagccccgaagacgcaaacaatgtgccgcgcgacaatctgatgctgatcacaacc
ggcagccagggcgagcgccgtgcggcctccgcgcagctggcgcgcggcaaataccgcggg
ctggagctgaaggagggcgacaccttcctgttctcctcaaagaccatcccgggcaatgaa
aagggcgtgatccgcattatcaaccagttctctgaaatgggtgtggatgtggttgatgac
agctccggcctttaccatgtgtcggggcacgccaatgggccggatctggaaaccatgcat
accctgctgaagcccagaatgctggtgccgatgcacggcgagcaccgccatttgcgccaa
cacgcccgcctgggcgaggcaaagggcattgccagcgcggttgtggtcaacggaatgatg
atggacctcggcggcgacgcgcccaagtccgccggctatgtcgataccggccgcacctat
ctggacggatctgtcaaatacggtgcgatggacggtgttgtccgcgaccgtatccgcatg
gcgctgaacggccatgtggtggtgacagtgctgctggacgagcaggacgaaccgctgggc
gagccctggtgcgacgtcaagggcctgcctgagaccggcagttctaacgccgccctggtc
gagataatggaagcggatctgaaccagttcctgatgcgcgccggtgccaagacgctgcgc
gatgaggagaagctggaacaggagctgcgccgtattgcccgccaaagcgcccatagcgag
atcggcaaaaaacccgaggtgacggtggtcgtcagccgcatgcgctga

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