Leisingera sp. NJS204: ETW24_13750
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Entry
ETW24_13750 CDS
T05817
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lej
Leisingera sp. NJS204
Pathway
lej02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lej00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ETW24_13750 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lej03021
]
ETW24_13750 (rpoD)
Transcription machinery [BR:
lej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ETW24_13750 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
QAX30348
LinkDB
All DBs
Position
complement(2791701..2793686)
Genome browser
AA seq
661 aa
AA seq
DB search
MAAKDTDDRKPDDQDAEISLDMSQTQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIE
DVMSMLSEMGINIIEDEEAEEEENKGTTDLVTTEGPREVALAGAQAEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWHDELLSEDILLRDVI
DLEATFGNQLDEDGEEEAPVVDTSAVAAAKPVKDEGPELDADGNPIASDDDDDEDEQANM
SLAAMEAALKDRVLVTLERISTDFAQLSEMQDSRISATLNEDGSFSTQDEATYQALRSEI
VELVNGLHLHNNRIEALIDQLYGINRRVMQIDSAMVKLADQARINRREFIDAYRGRELDP
NWLADMGGKPGRGWQMFIERSTDKVEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaccgacgaccgcaaacctgatgatcaggacgccgaaatctcactc
gacatgagccagactcaggtcaagaagatgatcgcggaggcccgcgagaaaggctacatc
acctacgatcagctcaatcaggttctgccgccggatcaggtcagttcggaacagatcgaa
gacgtgatgtcgatgctcagcgaaatgggcatcaacatcatcgaggacgaagaggccgaa
gaagaagagaacaagggcaccaccgaccttgtgaccaccgaaggcccgcgcgaggttgcg
ctggccggcgcccaggctgaaaagctggaccgcaccgatgacccggtgcgcatgtacctg
cgcgagatgggctcggttgagctgctgagccgtgaaggcgagattgccatcgccaagcgg
atcgaagccggccgcaatacgatgatcctggggctatgcgaaagcccactgaccttccag
gcgatcaccatctggcacgacgaactgctgtccgaggacatcctgctgcgcgacgtcatc
gacctggaggccacctttggcaaccaattggacgaagacggcgaggaggaagcgccggtc
gtcgatacatccgctgtggctgcggccaagccggttaaagacgaaggtcccgagctggac
gccgacggcaatccgattgccagcgatgacgacgatgacgaggatgaacaggccaacatg
tcgctggccgcgatggaggccgctctcaaggaccgtgttctggtcacgctggagcggatc
tcgactgactttgcgcagctgtccgaaatgcaggacagccggatctcggcaaccctgaac
gaggacggctccttcagcactcaggacgaggcgacctatcaggcgctgcgctcggaaatc
gtcgaactggtgaacgggctgcatctgcacaacaaccggatcgaagcgctgattgaccag
ctttacggcatcaaccgccgggtgatgcagattgacagcgcgatggtcaagctggccgac
caggcccgcatcaaccgccgcgagttcattgatgcctaccgcggccgcgagctggacccg
aactggctggccgacatgggcggcaagcccggccgcggctggcagatgttcatcgaacgc
tctaccgacaaggtcgaagaactgcgcgccgacatggcccaggtcggccagtatgttggt
ctggatatctcggaattccgccgcattgtgcagcaggttcaaaagggcgaaaaagaagcc
cgccaggccaagaaggaaatggtcgaggcgaacctgcgcctggtaatctcgattgccaag
aaatacaccaaccgcggcctgcagttcctggacctgatccaggaaggcaacatcggcctg
atgaaggcggtggacaaattcgaataccgccgcggctacaagttctcgacctacgccacc
tggtggatccgtcaggccatcacccgctcgatcgcggatcaggcacgcaccatccggatt
ccggtccacatgatcgagaccatcaacaagctggtccgcaccggccgccagatgctgcat
gagatcggccgcgagccgaccccggaagagctggcggaaaagctgcagatgccgctggag
aaggtccgcaaggtgatgaagatcgccaaggagccgatcagccttgaaaccccgatcggg
gacgaggaagacagccagctgggtgatttcatcgaggacaagaatgccgtgctgcccttg
gacagcgccattcaggaaaacctcaaggaaaccaccacccgggttctggcgtcgctcacc
ccgcgcgaggaacgggttctgcggatgcgcttcggcatcggcatgaacaccgaccacacg
ctggaggaggtcggccagcagttcagcgtgacccgcgaacggatccgccagatcgaagcg
aaagcgctcaggaagttgaagcaccccagccgcagccgcaaactgcgcagcttcctggat
cagtaa
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