Leisingera sp. NJS204: ETW24_20490
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Entry
ETW24_20490 CDS
T05817
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lej
Leisingera sp. NJS204
Pathway
lej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETW24_20490 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lej03019
]
ETW24_20490 (rnr)
03016 Transfer RNA biogenesis [BR:
lej03016
]
ETW24_20490 (rnr)
Enzymes [BR:
lej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ETW24_20490 (rnr)
Messenger RNA biogenesis [BR:
lej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETW24_20490 (rnr)
Transfer RNA biogenesis [BR:
lej03016
]
Prokaryotic type
tRNA degradation factors
ETW24_20490 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QAX31567
LinkDB
All DBs
Position
complement(4208473..4210752)
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AA seq
759 aa
AA seq
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MSRIPSKAEILDWISANPTHTSKRDIAKAFGIKGADRIDLKRILKELEGEGHLQKRKKTY
RDPDQLPPVTVLQVKAPDDNGDLYGRPLEWHGEGVEPVILILPRASDPALGEGDKILAKL
QQVPDQDHNYEARLIRRIGSNPKRVLGIFRAGSEGGRIVPIDKAASSEWMVAPDAINGAK
DGELIEAEQAGPKGRMGLPRARIVERLGDPAAPKAVSLIAIHQHGIPDHFPDPVMAEADA
AKPMGLKGREDLRELPLVTIDPADARDHDDACFAHADDDPKNPGGHVIWVAIADVAAYVR
PGSALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQVDADGNKIG
HRFVRGLMRSAASLHYAEVQEAMDGTPNEKTTPFVEDVIKPLFAAYQALIRARAVREPLD
LDLPERKIILDDAGQVTSVAFRDRLDAHKLIEEFMILANVAAAETLIKKRSPLLFRVHEE
PAQEKLEALRETARAAGLNLAKGQVLQTRHLNALLNHAAGTDEAELINISTLRSMQQAYY
NPENFGHFGLALKNYAHFTSPIRRYADLIVHRSLVSSHGWGDDGLDEAQIERLEDTATHI
SDTERRSMIAERDTTDRYLASYLSERVGNEFEGRISGIARFGAFVKLDETGADGLVPVRS
IGREFFHFDAQAGTLMGADTGMTLAIGQRVTVRLVQAAPVTGGLELELLAIENLELPKGG
GSRKGGRRSPAGRTVKRKAAKSKHKGAKVKRKVERKRRE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtattccctccaaggccgaaatcctcgactggatctccgccaacccgacccat
acctccaagcgcgacatcgccaaggcctttggcatcaagggcgccgaccgcatcgacctc
aagcgcatcctgaaggagctggagggtgagggccacttgcagaagcgcaagaagacctac
cgcgacccggaccagctgccgccggtgaccgtgctgcaggtaaaggcgccggacgataat
ggcgacctgtatggtcggccgctggaatggcacggcgaaggggtggaaccggttattctg
atcctcccccgcgcctccgacccggccctgggcgaaggcgacaaaatcctggccaagctg
cagcaggtgccggatcaggaccacaattacgaggcccggctgatccgccgcatcggcagc
aatccgaaacgggtgctgggcattttccgcgccggttccgaaggtggacggattgtgccg
atcgacaaggccgcctccagcgaatggatggtagccccggacgccatcaacggcgccaaa
gacggcgagctgatcgaagccgaacaggcaggccccaagggccgcatgggcctgccgcgc
gcgcggatcgtggaacggctgggcgacccggcagcaccaaaggcggtgtcgctgattgcc
attcatcagcatggtatccccgatcacttccccgatccggtcatggccgaggccgatgcc
gccaagccgatgggcctcaagggccgcgaagacctgcgcgagctgccgctggttaccatc
gaccccgcagatgcgcgcgatcatgacgacgcctgctttgcccatgctgacgacgacccg
aaaaacccgggcggccatgtgatctgggtggcgattgccgatgtggcggcctatgtgcgc
cccggctctgcgctggaccgcgaggcgcgcaaacgcggcaactccagctatttcccggac
cgggtggtgccgatgctgccggaccggctgtcgggcgatctgtgcagcttgcacgaaggg
gtgccgcgcgcctgtatcgcggtgcggatgcaggtggacgccgatggcaacaagatcgga
caccggtttgtgcgcgggctgatgcgctctgccgcctcgctgcattacgccgaggtgcag
gaggccatggacggcactccgaacgaaaagaccactccttttgtggaagatgtgatcaag
ccgcttttcgccgcatatcaggctctaataagagcgcgtgcggtgcgggaacccctggac
ttggacctgccggagcgcaaaatcatcctggatgacgctggtcaggtcacctcggttgcc
ttccgcgaccggctggatgcgcacaagctgattgaggagttcatgatcctcgccaatgtc
gccgcggcggagacgctgatcaagaaacgctcgccgctgctgttccgggtgcatgaggaa
ccggcgcaggaaaagctggaagcactgcgcgaaaccgcccgcgcggcagggttgaacctg
gccaagggccaggtgctgcaaacccggcatctgaatgcgctgctgaaccacgcggcggga
accgatgaggcggagctgatcaacatctccaccctgcggtcgatgcagcaggcctattac
aacccggagaactttggccatttcggcctggcactcaagaactacgcacatttcacctcg
ccgatccgccgctatgccgatctgatcgtgcaccgttcgctggtctcctcgcatggctgg
ggcgacgatgggctggacgaagcccagattgaacggctggaggacaccgccacccatatc
tctgacaccgaacggcggtcgatgattgctgaacgggacaccaccgaccgttatctggcg
tcctacctcagtgaacgggtaggcaatgaattcgaaggccggatcagcggtattgcccgg
ttcggggcctttgtgaaactggatgagaccggcgccgacggattggtcccggtgcgctcg
atcgggcgggagtttttccatttcgacgcccaggccggcacgctgatgggggccgataca
ggcatgaccctggccatcggccaacgggtcaccgtgcggctggttcaggcggcaccggtg
accggtgggctggagctggagttgctggcaattgaaaacctggaactgcccaagggcggc
ggatcccgcaaaggcggacggcgcagcccggcaggccgcaccgtcaagcgcaaggcagca
aagtccaagcacaaaggcgccaaagtaaaacgcaaagttgaacgcaagcggcgggaataa
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