Leptolinea sp. HRD-7: hrd7_05850
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Entry
hrd7_05850 CDS
T08293
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lek
Leptolinea sp. HRD-7
Pathway
lek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hrd7_05850 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lek03019
]
hrd7_05850 (deaD)
03009 Ribosome biogenesis [BR:
lek03009
]
hrd7_05850 (deaD)
Enzymes [BR:
lek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
hrd7_05850 (deaD)
Messenger RNA biogenesis [BR:
lek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
hrd7_05850 (deaD)
Ribosome biogenesis [BR:
lek03009
]
Prokaryotic type
rRNA helicases
hrd7_05850 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
SNF2-rel_dom
Cas3-like_C_2
AAA_22
Flavi_DEAD
PG_binding_2
FlgT_C
UvrD-helicase
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
BCY16736
LinkDB
All DBs
Position
615029..616735
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AA seq
568 aa
AA seq
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MALSFEELGLQPQFIKAVREMGFESPTPIQEAAIPALLEGRSVIGQAQTGTGKTAAFVLP
LLHKVESGKMRAPQALILAPTRELAIQVTDAARQMAQETPLRVMTVYGGQAYSIQLRQID
RGVDVVVGTPGRMLDLIKKKLLDLSHVKYMVLDEADEMLEMGFIEDVETIFKAIPAERQT
ALFSATLPDAIRKLAAKYIDDPLQVSVITGQRTVAETTQQFLRVRDENKQAVLLRILEAE
EVKSALVFTRTKARAQELSDELNRLGYPAGALHGDLDQSKREWVMDRFRRKVINLLVATD
VAARGLDIDDVSHVFNYDMPEDTEDYIHRIGRTGRAGKKGNAITFIHSRERGRLSQIEGY
VKQKISEYTLPTRDEILQKRDERFAEKLTNEMSDGKLKRETALVAKMVEFGFDPIEIAAA
AIKMARSGETPVPSMDLTEPAPISRSQTGRGDRRDGYASRDNRASRGNADRAGNNAGGGF
RTGRPRKAPEAGMVRFRMNLGNQHGIRPGDVVGAIASEVGISGKSIGAIDIQTDCTFVDV
AEQHARQVLQKSGGKYSLRGKTVVLKLA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggctttatcgtttgaagaactcggcttacagccgcaatttattaaggctgttcgcgaa
atggggtttgaatcccccactcccatccaggaagcggctatcccggcgctactggaagga
cgctcggtcattggccaggcgcagaccggtaccggcaagaccgccgcgttcgtgctgcct
ctgctgcacaaagttgaatccggcaagatgcgagccccgcaggcgttgatccttgccccc
acccgtgaactggccatccaggtgacggacgccgccaggcagatggcgcaggaaaccccg
ctccgcgtaatgaccgtctacggcggccaggcttacagcatccagcttcgccagatcgac
cgcggtgttgatgtggtggtgggtacccccggccggatgctcgacctgatcaaaaagaaa
ttgctcgatctgagtcacgtgaaatatatggtacttgacgaagccgatgaaatgctcgaa
atgggtttcatcgaagatgttgagaccattttcaaagccatccccgcagaacggcagacc
gcgctgttttccgccaccctgccggatgccatccgcaaactggccgccaagtacattgac
gacccgctgcaggtgtctgtcatcaccggtcagcgtaccgttgccgaaaccacccagcag
ttcctgcgggtgcgtgatgaaaataagcaggctgtgctgctgcgcatcctcgaagctgaa
gaagtgaagagcgcgctggtcttcacccgcaccaaagcccgtgcccaggaactttctgac
gagctcaaccggttgggttatcccgccggcgccctgcacggtgacctggaccagagcaaa
cgcgaatgggtgatggaccgcttccgccgtaaagtcatcaacctgctggtagccaccgac
gtggcggctcgcggtctggacattgacgatgtgtcgcacgtgttcaactacgacatgccc
gaagacaccgaagattacatccaccgcatcggccgcacaggccgcgccggcaaaaagggc
aacgccatcaccttcatccactcccgcgaacgcggacgtctctcccagatcgaagggtat
gtcaaacagaagatctctgaatacaccctgcccacccgtgatgagatcctgcagaaacgt
gacgaacgtttcgccgagaaactcaccaatgaaatgagtgacggcaaactcaaacgcgag
actgccctggtggctaagatggtcgaattcggttttgacccgatcgagatcgcggccgcg
gccattaagatggcccgctccggtgaaacccctgttccctcgatggacctcaccgagccg
gcgcccatttcccgcagccagaccggccgcggtgaccgccgcgacggctacgccagccgt
gataaccgcgccagccgcggcaatgcggatcgcgccgggaacaacgccggcggtggtttc
cgcaccggccgtccgcgcaaagccccggaagccggcatggtacgcttccgcatgaacctg
ggcaaccagcacggcatccgtcccggtgacgtggtgggcgccatcgccagcgaagtcggc
atttctggcaagtccattggcgcgatcgatatccaaaccgattgcacctttgtggatgtg
gccgaacagcatgcccgtcaggtgctgcagaagagcggcggaaagtattcgctgcgcggc
aagacggttgtgttgaaactggcgtaa
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