Leptolinea sp. HRD-7: hrd7_29980
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Entry
hrd7_29980 CDS
T08293
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lek
Leptolinea sp. HRD-7
Brite
KEGG Orthology (KO) [BR:
lek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lek03032
]
hrd7_29980 (topA)
03400 DNA repair and recombination proteins [BR:
lek03400
]
hrd7_29980 (topA)
Enzymes [BR:
lek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
hrd7_29980 (topA)
DNA replication proteins [BR:
lek03032
]
Prokaryotic type
DNA Topoisomerases
hrd7_29980 (topA)
DNA repair and recombination proteins [BR:
lek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
hrd7_29980 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF5679
zf-C2HC5
Toprim_4
Zn_ribbon_DUF2089
Zn_ribbon_IS1595
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BCY19149
LinkDB
All DBs
Position
complement(3250889..3253234)
Genome browser
AA seq
781 aa
AA seq
DB search
MQNPEAGFTVTGTPITRGTCTVCGTKLSRMGATEAHNGLEKPEKAARPARTPKAVKVKAG
GKKSAKTEAAQAGPRVGKLVIVESPAKAKTIGRFLGHGYTVRASIGHVRDLLRSSLSVDV
EHDFAPKYRVPNEKRQIVKELKSLAKNADEIYLATDPDREGEAIAWHLLESAEMRPEISH
RVVFHEITEPAIAEAFSHPRQIDSSLVDAQQARRILDRLVGYSLTPLLWEKVRGRLSAGR
VQSVALRLVVEREREIEAFKPEEYWTIGAEFSPAGSRTKYLSRLYRIDDREPDLPNEMTV
NGLCGDIEQAAYEISKIKKSERRRKPAPPFTTSTLQQEASRKLGFTARRTMAVAQQLYEG
IAVHGSGTVGLITYMRTDSTNVSELAQNEVRKFITEMYGNDFLPVNPPQYKTRTIGAQEA
HEAIRPTSVLRRPDDVKDQLTPEQFKLYQLIWLRFVSSQMEDAIYDTVTVEVSGKSTAHE
YIFRTSGQTVKFPGFLVVYEEAKNEDRDKDEEENQKIPVGLEEGQKQILNRLIPEQHFTQ
PPPRYTEATLVAALEENGIGRPSTYAPTISTIQQRGYVVRENKRLFPTETGILVTDLLVE
HFPDVVDIQFTATMEEDLDKIASNELPWVKVVREFYNGFEQEVEKARKEMPEIKEEPEKI
DRPCPVCGNDLVIRWGRYGKFISCSTYPTCKHTEPFLEKIGVTCPDDGGELVERKSRKGR
FFYGCANYPQCQFVSWKKPVAQPCPSCGGVLVIANKREYQCLSCKETFLQEQVQGAISDQ
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccggaagccggtttcacagtaaccggcactccgatcaccagaggaacatgc
actgtttgcggaacaaaactatcccggatgggcgccaccgaagcccacaacggactggaa
aaaccggagaaagcggcacggcctgccagaactccaaaagcagtgaaggtaaaagctgga
ggcaagaagtctgccaaaactgaggctgctcaagccggtccacgggtaggtaaactggta
atcgtcgaatcaccggctaaagccaagactatcggacggtttctgggacacggctataca
gtccgcgcgtcaataggtcatgtgcgcgacctgctgcgctccagcctctctgttgatgtg
gaacacgattttgcccccaaataccgtgtacccaatgagaaacggcagatcgttaaagaa
ttgaaatcactggcaaaaaatgccgatgagatttacctggcaaccgaccctgaccgtgaa
ggtgaagcgattgcctggcatttgttggaatccgctgaaatgcgaccagagatatcacac
cgggttgtttttcatgagatcacagaaccggccattgctgaggcgttttcgcatccgcgt
caaattgattccagccttgttgacgcccagcaggcacgccgtatccttgaccggttagtg
ggttatagcctgacaccattgttatgggaaaaggtccgtggacgattatccgccggacga
gttcagtcagttgcgctgcgactggttgtagagcgtgaacgcgaaattgaagcgttcaaa
cctgaagaatactggacgattggcgcggagttttcgcccgctggcagccggacaaaatac
ctgtcgcgcctgtaccggattgatgacagggagccggacctccccaacgagatgaccgtc
aacggtttatgcggcgatattgaacaagccgcatacgagatatcaaagatcaaaaagagc
gaacgccggcgtaaacccgcgcctcctttcacaaccagtactttacaacaagaagcctcg
cgcaaactgggctttaccgcgcggcgcaccatggctgtggctcaacaactctacgaaggt
atcgcggttcacggttccggaactgtaggtttgatcacatatatgcgtacggattcaacc
aatgtttcggagctggcgcaaaacgaggtcaggaaatttatcaccgaaatgtacgggaat
gatttccttcccgtaaatcctccccaatataaaacccggactatcggggctcaagaggca
catgaagctattcgccctacttcggttttacgccggcctgatgacgtaaaagatcaatta
acccccgaacaattcaaactgtatcagttgatctggcttcggttcgtatcatctcaaatg
gaagatgcgatttatgataccgtcacagtagaagtttcgggaaaatctactgcccatgaa
tacatattccgtacatccggtcagacggtcaagttccccggtttccttgttgtttatgaa
gaggcaaaaaacgaagaccgtgataaagatgaggaagaaaaccagaagatacctgttggg
ttagaagaagggcagaaacaaattctgaaccggctcattcctgagcaacacttcacccag
ccaccgccccgttatacggaagccactctggtagccgcgcttgaagaaaatggaattggc
cgcccttctacatacgctccaacaatttccactattcagcaacgcgggtatgttgtgcgt
gaaaataaacgtcttttccccacagagacaggcatactggttacagacctgctggtggag
catttccctgatgttgtggatattcaattcaccgctacgatggaagaagacctggataaa
attgcttccaatgaattgccatgggtgaaagttgttagagaattctacaatgggtttgaa
caagaggtagagaaagctcgcaaggaaatgccggaaatcaaagaagagccggaaaagatt
gaccgcccatgcccggtttgcggaaatgatcttgtcatccgctggggccgatacggaaaa
tttatttcttgcagtacttacccgacatgcaaacatactgagcctttcctggaaaagatc
ggtgtcacatgcccggatgacggtggtgaactggttgaacgtaaatcgcgaaaggggcgg
tttttctatggctgcgcgaattacccgcaatgccagtttgtctcatggaagaagcctgta
gctcagccttgtccgagttgcggcggggttctcgtcatcgcgaataaacgtgaataccag
tgcctctcctgcaaagagacattccttcaggaacaggttcagggagcaatttcagaccag
gcatag
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