Lodderomyces elongisporus: PVL30_000060
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Entry
PVL30_000060 CDS
T01116
Symbol
HDA1
Name
(RefSeq) Histone deacetylase hda1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lel
Lodderomyces elongisporus
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lel01009
]
PVL30_000060 (HDA1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_000060 (HDA1)
04131 Membrane trafficking [BR:
lel04131
]
PVL30_000060 (HDA1)
03036 Chromosome and associated proteins [BR:
lel03036
]
PVL30_000060 (HDA1)
Enzymes [BR:
lel01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PVL30_000060 (HDA1)
Protein phosphatases and associated proteins [BR:
lel01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
PVL30_000060 (HDA1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
PVL30_000060 (HDA1)
Membrane trafficking [BR:
lel04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PVL30_000060 (HDA1)
Chromosome and associated proteins [BR:
lel03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
PVL30_000060 (HDA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2
Motif
Other DBs
NCBI-GeneID:
5235611
NCBI-ProteinID:
XP_001527542
UniProt:
A5DRS6
LinkDB
All DBs
Position
1:199077..201809
Genome browser
AA seq
910 aa
AA seq
DB search
MEPDNIEAAENKSPKLQQNPAVQKEEINFDASMRDIKPNAPHALDRMEVELKSEPVVVKT
EPAVDIKVEEDISPEKLTKDSLDVDMEEGAKFETKAETETETETETGTETGTEIQRETKR
KTEQDADANADGNKYSNSNSNSNGDELVDTDVVEPATKKIKLETDQSNGNEQSNGKIDSL
SPAPAKLRPVIVQPSKPQLFYTPLKTGLVYDVRMRYHAKIFTSYFEYTDPHPEDPRRIYR
IYKRLAEAGLVQDPSLSGIDELGPFIEKIPIREATIEEILEVHSEKHLEHIQSTETMTKD
ELLRETATGDSIYVNNDSYFSAKLSCGGTIEACKAVIEGRVKNSLAAVRPPGHHAEPDDP
GGFCLFSNVAVAAKNILKSYPESVRRIVILDWDIHHGNGTQKSFYDDPRVLYISLHRYEN
GKFYPGTKYGGADQVGEGAGKGYNINIPWRTAGMRDGDYVYAFNKVVIPTILEFDPDLII
VSSGFDAADGDVIGGCHVSPAGYGYMTHMLKGIAKGKLAVILEGGYNLDSISESALAVAK
VLIGEPPENTVKQQPHPDTIEVIDEVIKIQSRFWECLSHGVTKTTFDDVYDLPDLDKERY
KLTNISDPIRSHQNAEAFAKREFINIPIVNHQAKDHKQSSFTCDIPDQADDIVMASPDIY
ECSTVIITIHDPPELWAYINPTNGVIESNSTIVLEQPLFQIMDKVAKEKDSDNTDKIGYM
DINIPSFQLPIPGLSYSHESSYNPTIFAQELLLYIWDNYIAYFQQLKKVIFVGFGDAYQS
IVHLFSKRPSQEIKNLVKFTVAYLNRTQLKPIVPVMDESMVDWFYHNSTIFTSCYNQCWS
TSNGNHGHNSSNSTSSNDANGGEELKKPRRKFGRVLKAKADGLFDVINEKFDEGVDNILD
SIEDYSSSDE
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgataatatcgaggctgcagaaaacaagtctcccaagttgcaacaaaatccc
gccgtgcaaaaggaagagatcaattttgatgcatcaatgagagacattaaaccgaatgca
ccacacgctctagataggatggaggtcgagttgaaaagtgaaccggttgtggttaaaact
gaaccagcagtggatattaaagttgaagaagacattctgcctgaaaaactcaccaaagat
agccttgacgtggatatggaagagggagcaaaatttgaaacgaaagctgaaactgaaact
gaaactgaaactgaaactggaactgaaactggaactgaaattcaaagagaaacaaaaagg
aaaactgaacaagatgcagacgcaaacgcagacggaaacaaatacagcaacagcaacagc
aacagcaacggagacgaacttgtagatacagatgttgtcgaacctgcaacaaagaaaatc
aagcttgaaactgaccagagtaacggcaatgaacaaagtaatggtaagatagattcatta
tcgccggcacctgcaaaactacgtccagttatagtgcagccgtcaaaacctcaattgttt
tatactcccctcaagactggtttagtctacgacgttcgaatgaggtatcatgctaaaata
ttcacctcatactttgaatacaccgaccctcaccctgaagatccacgtcgtatctataga
atctacaaaagacttgccgaggcgggcttggtccaggatccttcactttcaggaatagat
gaattgggaccctttattgaaaagatccccattagagaggcaactatagaagagattttg
gaagtacactctgaaaaacacctcgagcacattcaatctacagaaacaatgacgaaggac
gaattattgagagaaacagcaaccggagactcgatatacgtcaataatgattcctacttt
tcagcgaagttatcctgtggtggaaccattgaagcatgcaaagccgtcattgaaggcaga
gtcaagaactcattggccgcagtgagaccacctggccaccatgccgaaccagatgaccct
ggtggattttgtttattcagtaatgttgctgttgcggcaaaaaacatccttaaatcgtac
ccagaatcagtaaggagaattgttattctagattgggatattcatcatggaaatggtaca
caaaaatcattttacgacgatccaagagtactatacatctcgctacatcgttatgaaaat
ggtaaattttatcctggtacaaaatatggtggtgcagaccaagtaggggaaggtgccggc
aaaggatataacatcaatatcccatggagaaccgctggaatgagggatggtgactatgtt
tatgcattcaacaaagttgttatccccacaattctagaatttgaccctgatttgatcatt
gtcagctcaggattcgatgctgcagatggtgatgttattggcgggtgtcatgttagccct
gcaggctatggatacatgacacacatgctcaaaggtatcgcaaaggggaaactcgcagtt
atacttgagggtggatataacctcgactctatcagtgaaagtgcattggccgtggcaaaa
gtgctcattggagagccacctgaaaatactgtgaagcagcaaccacatccagacaccatt
gaagtaatcgatgaggtaataaaaatacaatcgaggttctgggaatgtctcagccatggt
gtaacaaagactacatttgatgatgtatacgatcttcctgatctagataaagaacgatac
aaactcacaaacatttcggatccaattcgatcgcatcaaaacgcagaagcgtttgccaaa
agagaatttatcaacattccaatcgtcaatcatcaagctaaggatcataagcaatctagc
ttcacatgtgatatccctgatcaagccgatgatattgtgatggcgagtccagatatttat
gagtgctctaccgtaatcataactattcatgacccaccagagctatgggcatatatcaac
ccaactaatggtgttattgaaagcaattccactattgtattagagcagcccctttttcag
ataatggacaaagtagccaaggaaaaagacctggataacactgataagattgggtacatg
gacatcaacattccatcatttcaattaccaattccaggactttcatattcgcatgaatct
tcttataaccctacaatttttgcacaagagcttctcctttacatatgggacaactacatt
gcttatttccagcagttgaaaaaagttatctttgttggatttggtgatgcatatcagagc
atagtccatttgtttagtaaacgtccgtcacaggagattaagaacttggtgaaattcact
gtcgcatatttaaacagaacacaattgaaaccgattgttccagtaatggatgaaagcatg
gtggattggttttatcacaattcaacaattttcacgagttgttataatcaatgttggagt
acttcaaatggaaaccacggccataacagtagtaattcaacaagtagcaatgatgcaaat
ggcggcgaagagttgaagaaaccaagaagaaaatttggaagagttcttaaggccaaggca
gacggattgtttgatgtgattaacgaaaagtttgacgagggtgtggataatattttagat
agtattgaggattactccagttccgacgaataa
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