Lodderomyces elongisporus: PVL30_000093
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Entry
PVL30_000093 CDS
T01116
Symbol
RPD3_1
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03082
ATP-dependent chromatin remodeling
lel03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PVL30_000093 (RPD3_1)
03083 Polycomb repressive complex
PVL30_000093 (RPD3_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lel03036
]
PVL30_000093 (RPD3_1)
Enzymes [BR:
lel01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PVL30_000093 (RPD3_1)
Chromosome and associated proteins [BR:
lel03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
PVL30_000093 (RPD3_1)
HDAC complexes
Sin3A-HDAC complex
PVL30_000093 (RPD3_1)
BRAF-HDAC complex
PVL30_000093 (RPD3_1)
REST complex
PVL30_000093 (RPD3_1)
SHIP complex
PVL30_000093 (RPD3_1)
MiDAC complex
PVL30_000093 (RPD3_1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
PVL30_000093 (RPD3_1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
PVL30_000093 (RPD3_1)
Chromatin remodeling factors
NuRD complex
PVL30_000093 (RPD3_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
5234926
NCBI-ProteinID:
XP_001527576
UniProt:
A5DRW0
LinkDB
All DBs
Position
1:293278..294843
Genome browser
AA seq
521 aa
AA seq
DB search
MYVELPFDELKVGTSKRRVAYFYDQDVGNYFYGTGHCMKPHRIRMTHSLIMNYELYKKME
IYRAEPATNLELTQFHSDEYIDFIDRVTPDNLHLFPREAQIFNVGEDCPVFDGLNEFCKI
SCGGSMEGAARLNNGDADVAINYAGGLHHAKKSEASGFCYTNDIVLAIIELLRKHPRVLY
IDTDVHHGDGVEEAFYTNDRVMTCSFHKFGEFFPGTGNVGDIGIGKGKYYSVNVPLRDGI
DDASYKSIFEPIISKIVEWYQPSAIVLQCGGDSLSGDRLGPFNLSMRGHANCVNFVRSLG
LPMMVLGGGGYTIRNVARTWAFETGICNGVLLPKELPYNGYYEYYAPTFELDVRSSNMNN
ANSKEYLDKILTQIVTNLDHTKHAPSVQMQDVPMDKEDLGDVYEDAAKAIDTKGGSQMQR
DKTIENGNEFYSDESKDVEERNIAVHDTSLASHNATSNQNNQAGNSGAMNGATDNTTDVQ
EVAAAESRKDNEHAAILFEEEKAEIDELNRVHDQQDQEMAD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttgaactaccctttgatgaattaaaagtgggtacttcgaaacgacgggtagct
tacttttacgatcaggatgttggtaattacttctatggtactggacattgtatgaaacca
caccgaataagaatgacgcattcattgattatgaattacgaactatacaagaagatggag
atttatcgagctgagccagctacaaatttggagctcacccagttccatagcgacgagtat
atcgattttattgatcgtgttacgccagacaatctacacttgtttcctcgagaagcacag
atattcaatgttggagaggattgtccagtgtttgatgggttgaacgaattttgtaagata
tcgtgcggtggttcaatggaaggcgctgcaagattaaacaatggcgacgccgatgtggca
ataaattatgctggtggtttgcatcatgctaaaaagtcggaagcttcggggttttgctac
acaaatgatattgttctagcgattatcgaattgcttcgtaagcatccaagagtattgtac
atcgatactgatgttcaccatggtgatggtgttgaggaagctttctacacaaatgaccga
gtgatgacttgttcgttccataaatttggtgagtttttccccggtaccggtaatgtaggt
gatattggtataggtaaagggaagtactattcagttaatgtacccttgagagatggaatt
gatgatgcatcttataaatcaatatttgagcccataatactgaagattgttgagtggtac
cagccatcagctattgttttgcagtgtggaggtgactcattgagcggagacaggttgggt
cctttcaacttgtcaatgagaggacacgcaaattgtgtcaattttgtgcgttctttgggg
cttccaatgatggtacttggtggaggtgggtatactataagaaatgtagctcgaacatgg
gcatttgagactggtatttgcaatggtgtgcttttgccgaaggaactaccatacaatggc
tattatgagtattacgcgcccacgtttgaactcgatgttcgatcatcgaatatgaataat
gcaaactcaaaagagtacttggataagatacttactcaaattgtaaccaatctcgatcat
acgaagcatgcaccttcggtgcaaatgcaagatgtccccatggacaaggaagatcttggt
gatgtgtatgaagacgcggcaaaagcgattgacacaaaaggaggatcacaaatgcaaaga
gataaaacaattgaaaatggaaatgaattctacagcgatgagctgaaggatgtcgaggaa
cgcaacattgctgtgcatgatacgtctttggcgtcacacaatgcaacgtcgaatcagaat
aatcaagctggcaattctggtgctatgaatggtgccacggacaataccactgacgttcaa
gaagttgcagctgcagaatcccgtaaagacaatgaacatgcagctatattgtttgaagaa
gaaaaagcggaaatagacgaattgaatagggtccatgatcagcaagatcaggagatggca
gactaa
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