Lodderomyces elongisporus: PVL30_000130
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Entry
PVL30_000130 CDS
T01116
Symbol
PRP40
Name
(RefSeq) U1 snRNP protein
KO
K12821
pre-mRNA-processing factor 40
Organism
lel
Lodderomyces elongisporus
Pathway
lel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVL30_000130 (PRP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lel03041
]
PVL30_000130 (PRP40)
Spliceosome [BR:
lel03041
]
Complex A
U1 snRNP components
U1 related factors
PVL30_000130 (PRP40)
Complex B
PVL30_000130 (PRP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
5235004
NCBI-ProteinID:
XP_001527615
UniProt:
A5DRZ9
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Position
1:393624..395513
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AA seq
629 aa
AA seq
DB search
MWQEYQTDEGQTYYYNEDTGETTWDKPAELNGDHNDTSENEVSIAPIGTIPDKDSSAKEA
GESGEVEEVGEAGTNSAIVTTALEGKEQIWHEYATDEGQKYYYNSITGETTWDKPDEFNS
ELENNTNESTGDAEENFLDLELKSKPIQLPSSMTIPNANDSEEKITFDKKNDKTDADKNE
DNENETKNENEEAFLQLLKDNQVDSTWSFQKVMEKLIAKPQYWAVSNPMTRKRLYENHLV
EKVQSEMNNNGINKKEILETFKKNFIVELQRLHNESKITSETRWTSLKRILAQEENPVYK
HSMVEDKEMARIFFEFSDKIKRERETKIAANKEQALTELEKYLTSINTSLVTETANFEEL
LSRLLKDPRYLQNKHFESLSPLDILDLYETKIYPELLSNLKTKLSRQQGQNYRQDRKARS
KFINLLKSLKLTANTKFCEIFDQIENEDAFFELCGRNGSTPLELFWDAVDQKRQLIKLKK
DLIEGILFDLKKKKNEQHDQHQVSESKDRQDKQIEKNESNKKNDQKPNSSFESPSWPSKE
SFVEKLKSIQDDRLVKLDLDLDLDKLDDDDSEIVQIYQALKNEHEAREKRRRTSSSRKRG
ATEAAIANESRHHKKQRPHKEPVKPSLNY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaagaataccagaccgatgaaggtcaaacgtactattacaacgaagatacaggc
gaaacgacgtgggataaaccagcagaacttaatggagatcacaatgacactagcgaaaat
gaagtgagcatcgcaccaattggaacaataccagacaaagattctagtgctaaagaagct
ggggaatctggagaagttgaggaagttggggaagctggaaccaatagtgctatagtaact
actgcattggaaggaaaagaacaaatttggcacgaatatgcaactgatgaaggacaaaaa
tattactataatctgatcactggtgaaactacatgggacaaaccagatgagttcaatagt
gaattggagaacaatacaaacgagtccactggtgatgcggaagaaaattttttggattta
gaacttaaaagcaaacctatccaattaccttcctctatgaccattcctaatgcaaacgat
tccgaggagaaaattacttttgataaaaaaaatgacaaaacagatgccgataaaaatgaa
gataatgagaatgaaactaaaaacgagaatgaggaagcatttttgcagttattaaaagat
aatcaagttgattctacttggtcttttcaaaaagtaatggaaaaacttatcgcaaaacca
caatattgggcagtgtccaacccgatgaccagaaaacgactatacgaaaatcacttggtt
gaaaaagtacagtcagaaatgaataataacggcataaataaaaaagagattcttgaaaca
tttaagaaaaattttattgttgaattgcaacgcttgcacaatgaatcaaaaataactctg
gaaaccaggtggacgtcacttaaaagaatattagcccaggaggaaaaccccgtttataaa
cattcaatggttgaggataaggagatggcacgaatatttttcgaatttctggacaagatc
aaacgtgaaagggaaacaaagattgctgcaaacaaagagcaagctcttaccgagcttgag
aaatatttgacgctgattaatacttccttggtcacagaaactgcaaactttgaagaatta
ttgtctcgactattaaaggaccctcgatatttacaaaacaagcactttgagtctttactg
ccattggatatccttgacttgtatgaaacaaagatttaccctgaacttttaagcaatttg
aaaaccaaactttcgagacaacaaggccaaaattatagacaagaccgtaaagcaaggtcc
aaatttatcaacttgctcaagtcgctcaaactaaccgcaaacacaaaattttgtgagatt
tttgatcaaatcgagaatgaagatgccttttttgagttatgtgggcgaaacggatctaca
ccattagagctcttttgggatgctgtagatcaaaagaggcagcttataaaattgaaaaag
gacttgatcgaaggcattttgtttgatttgaaaaagaagaaaaatgagcagcatgatcaa
caccaggtactggagtcaaaagacagacaagacaaacaaattgaaaagaatgagagtaac
aagaagaacgatcagaagccaaatagtctgtttgaatcaccaagttggccctcaaaggaa
tcatttgtcgagaaattaaagctgattcaagatgatagactagtaaaacttgatttggat
ttggatttggataaattggacgatgatgatagtgaaatcgtccagatttatcaagcgtta
aaaaatgaacacgaagccagagagaaaagaagaagaactagcagcagtaggaaaagggga
gctacagaagccgccattgctaatgaatcaaggcatcataagaagcagaggccacataaa
gaaccagttaaaccgctgctcaattactaa
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