Lodderomyces elongisporus: PVL30_000268
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Entry
PVL30_000268 CDS
T01116
Symbol
HNT3
Name
(RefSeq) aprataxin-like protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PVL30_000268 (HNT3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_000268 (HNT3)
Enzymes [BR:
lel01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
PVL30_000268 (HNT3)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
PVL30_000268 (HNT3)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
PVL30_000268 (HNT3)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
PVL30_000268 (HNT3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
PVL30_000268 (HNT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
zf-C2HE
HIT
zf-Di19
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
5235148
NCBI-ProteinID:
XP_001527753
UniProt:
A5DSD7
LinkDB
All DBs
Position
1:complement(728995..729855)
Genome browser
AA seq
286 aa
AA seq
DB search
MSFKDVFQKFIVNPEKHLDSILFFDDNVVIIKDLFPKSIRHLLVISRHQQVTHKHPLDVF
NTDYDDFSGEELFEQIRIYVEKAKDMIVENIQKTMVEPRVESVMEPIVEQNCIDETALQE
FRNTFIQAGIHSIPSLSNLHIHVMTKDFHSPRLKNKKHYNSFTTKFFVPFDELDPLYNRS
YYKLMTQRKQEKANARRITDKSQESNIDNVGGTLDVDFDSKQPTFILHTRDNTFLQDLIK
TTSFKCPSCNKHFGNSMVKLKEHLTVEFEQKYAVFGNIKKLEPNGM
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaagacgtttttcagaagtttatagtaaatccagaaaaacaccttgattct
attctctttttcgatgataatgttgttataattaaggatttgttccccaagtcgattaga
cacttgttggtgatttcacgtcatcagcaggtaacgcacaagcatcccttggatgtgttc
aatactgattatgacgactttagtggtgaagaattgttcgagcaaataagaatatatgtg
gagaaggcaaaggatatgattgtagagaatatacagaaaactatggtggagccgcgagta
gagctggttatggagccgatagtggagcagaattgtatagatgaaacagcactacaagag
tttagaaatacatttatacaagccggtattcattcaattccctcattgagcaatttgcat
atacatgttatgaccaaggatttccattcacctcgattaaaaaacaaaaaacactacaat
tcgtttaccactaaattctttgtcccattcgatgagttggatccactatataacagactg
tactataagttaatgacgcaaagaaaacaagaaaaagcaaatgcaaggagaataacagac
aagagccaagaatccaatattgataatgttggtggcacattagatgtcgattttgatctg
aaacaacctacttttatacttcacactagggacaatacttttttgcaggatcttataaaa
actacgctgtttaaatgcccgctgtgcaacaaacattttgggaactcaatggttaaattg
aaggaacatttgacggtggagtttgaacaaaagtatgctgtgtttggcaacatcaaaaag
ttggaacctaatggaatgtga
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