Lodderomyces elongisporus: PVL30_000270
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Entry
PVL30_000270 CDS
T01116
Symbol
NOT4
Name
(RefSeq) transcriptional repressor general negative regulator of transcription subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_000270 (NOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lel03000
]
PVL30_000270 (NOT4)
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_000270 (NOT4)
04121 Ubiquitin system [BR:
lel04121
]
PVL30_000270 (NOT4)
Enzymes [BR:
lel01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
PVL30_000270 (NOT4)
Transcription factors [BR:
lel03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
PVL30_000270 (NOT4)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_000270 (NOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PVL30_000270 (NOT4)
Ubiquitin system [BR:
lel04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
PVL30_000270 (NOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Rtf2
RRM_1
Baculo_IE-1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
5235622
NCBI-ProteinID:
XP_001527755
UniProt:
A5DSD9
LinkDB
All DBs
Position
1:join(731691..731740,732006..733707)
Genome browser
AA seq
583 aa
AA seq
DB search
MILPDDSFISDDEEEYCPLCVEEMDISDRNFKPCPCGYQICQFCYHNIRQNPELNGRCPG
CRRLYDDESVVYIKVSPEEIKLLQAKKEKRDREKKQREKERKETDMASKKHLSGLRVVQK
NLVYVTGLNPPCNPEELHSLLRSDKYFGQYGKISKIVINRKNPPSNTGSSASTSNHNHHH
HNNNNNSNNNNNQGSGLVVYVTFARKEDALNCITELDGSLCDGRILRAAHGTTKYCSSYL
RGHPCPNPNCMFLHEPGEEADSYTRKDLSTQQGIKMGMTSRAHTTSFGEETYIPNHVLNG
MSEEEVHQYQQPHSHAAISSSSLSTHHHQQQHQPQQQQQQQQQQQQQPHSQHFESKEHLP
ATAHWASSASATNSPTVNNNIPLANSAAFPTLAEIARDHKQQRKELKSRVSSSKVQKAAP
ATEDLSADDTFVLQFVEQLGEQLKNLDEIKTVKFKSSATGNKVPLFSFNCESCNETKPED
EKVIARQVIERFLLRPIKNYHLAYQNHPIVQQQSLLQRQQQQQQQQQQQQQQHTPIAAMA
QIQQKTEEQQKQAQQQLLLLQLQQQQLQQQQQQQQQQQNQNQN
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgattttacccgacgactcattcataagcgacgacgaagaagaatactgtccattatgt
gtggaggaaatggatatttccgataggaatttcaaaccatgtccttgtggataccagatt
tgtcaattttgctaccacaacattagacaaaacccagaattgaatggaagatgtcccgga
tgtagaagattatatgatgatgaaagcgtggtgtacatcaaggtcagtcccgaggaaatc
aaattattacaagcaaagaaggagaaacgtgaccgggagaagaaacaacgagaaaaggaa
agaaaagaaacggatatggctagtaagaaacatttgtctggattaagagttgtccaaaag
aacttggtttatgtcactggattgaatccaccttgtaaccccgaggaattgcattcgttg
ttgagatctgacaagtattttgggcaatatggtaagatttctaaaatagtcattaataga
aagaatccaccttccaacacgggttcatcagcatcaacatcgaaccacaaccatcaccac
cataataataataataatagcaacaacaacaacaaccaaggatccggattggtggtttat
gttacttttgcgagaaaagaagatgccttgaactgtatcacagagttagatgggtctctt
tgtgacggaagaattttgcgggctgctcatggaactacgaaatactgttcttcgtatttg
cgtggccacccatgtccaaacccaaattgtatgttcttgcatgagcccggagaagaggca
gactcatatacgagaaaggatttgtcaacgcagcagggtatcaagatgggcatgacttcg
agggcacacacaacatcttttggtgaagagacttatataccaaaccacgttctcaatgga
atgtcagaagaagaggtacaccaataccagcaaccacattcacacgcagcaatttcttct
tcatccttatctacgcatcatcatcaacagcaacatcaaccacaacaacaacaacagcag
caacagcaacaacaacaacagccgcattctcaacactttgagtctaaagaacatcttcca
gcaactgcacactgggcaagctctgcatctgctacaaactctcccacagtcaacaacaac
attcctttggctaattcagcagcatttccaaccttggcggagattgctagagatcacaag
cagcaacgtaaagagctcaagagtagagtttcaagctcaaaagtgcaaaaagcagctcca
gctactgaagatcttagtgctgatgacacgtttgtattacagtttgttgagcaacttggt
gagcaattgaagaatttggatgaaatcaaaactgtcaaatttaagagctcggcaacaggt
aacaaagttccattattttcatttaattgcgaactgtgtaatgaaacaaaaccagaggat
gaaaaggttatcgcacgtcaagtgattgagagatttcttttgaggcccataaaaaactat
catttggcttatcaaaaccaccctatagtgcaacaacaatctttattgcaacgtcagcaa
cagcaacagcaacagcagcaacaacaacaacaacaacacacacctattgctgcgatggca
cagattcaacaaaagactgaggagcaacagaaacaagcgcaacagcaattgcttttgctt
caattgcaacagcaacagttgcaacagcaacaacaacaacaacaacaacaacaaaatcaa
aatcaaaattaa
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integrated database retrieval system
