Lodderomyces elongisporus: PVL30_000295
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Entry
PVL30_000295 CDS
T01116
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lel
Lodderomyces elongisporus
Pathway
lel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PVL30_000295 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_000295 (MSH6)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PVL30_000295 (MSH6)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_29
Motif
Other DBs
NCBI-GeneID:
5234858
NCBI-ProteinID:
XP_001527784
UniProt:
A5DSG8
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Position
1:complement(816658..820620)
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AA seq
1320 aa
AA seq
DB search
MAKLTTPMKASTMASQKAPGSSSTAKKKQQSTLMSFFKPMAAKSTQSCSSMQPQSVEEPT
QSNKTKSNLASSPLNSKSAFIKPDLSSDKESDKENDEIMDNTMHGYESSYSSHTTSPLDF
HQQVKRSFNASKSKQDTSTKTPLKERSTVMNSSPVANRRLGKKVNYAESDIDDDDDDEEV
VTRGKRRKIMSDVSDSDEEDEFKPDDNDDDADDDEDFNVDDNAMDDFIDDDEHEPSDDED
LVRDKEKGNVKRSRKGHQQQSNKSRKQQQQQQQQQQQQQEEEEKLRDPIKPTNAAHITGV
SSKSSFMEKFNATSLYSAEDYKPQQYQSITSATTNATATKKNFAKENEERYQWLVNIKDA
QKRTPDHPEYDPRTLYIPQSAWSKFTAFEKQYWEIKSQMWNTVVFFKKGKFYELYENDAI
IANTKFDLKIAGGGRANMKLAGIPEMSFEHWAKEFISHGYKVAKVDQKESMLAKEIRGGA
PGATKEEKIIKRELTGILTGGTLTDLDMISDDMSTYCLSIKEEQMEDGKGKKFGVAFVDT
STSELSLIELEDDTECTKLDTLVTQIKPKEIICEKGNLCSIATKILKFCAHSKHQIWNHM
NPITEFWDVDITLEQLVKSRYFEAENLDDFSKYPDVLVKFKENHDVAFNAFGGLLSYLKT
LKLDQSIMSLGNIKEYKISLNANSHMILDGITLNNLEILHNNYDGGDQGTLFKLLNQATT
PFGKRQLKKWVLHPLIKSEDINARFDSVEYLMGDGLELRSILQDTLANLPDLERLIARIH
SGTLRFKEFLRVIESFEKIAKVSSQLSEFTNVECGVLHKYLRNFPQAMSSHIGEWDDAFD
RVEAKQNIIVPAAGIDEEFDSSISIINDLEAQLNQQLKEYKREYRSQEICYRDSGKEVYL
IEMPVKVAKNVPSSWQTMGATSKVKRFWSPKVKQMARKLMEQRELHKSVCDTLKQRMYNK
FDKHYQTWMKVITCMANIDCIVALTKVSETMGFPSCRPEFVETQHGMIDFKELRHPCFVG
TKDFIPNDIKLGGDDEPSFGLLTGANAAGKSTIMRTTALAVILSQIGCFIPAESAKLAPV
DRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAVAES
VLHHLATHLQSIGFFATHFNSLGLAFETHPQVKPMRMAIIVDQTSRELTFLYKLESGTAP
GSFGMNVALMCGISKEIVDNAEVAAREYEKFSKLKRAKENKQENECGEEAEAEAEAEAEA
EAEAEAVAVAKATEISLGLQSDCIWYGDNRVQELERDILVYDETVKSRALFNIYKMIDAL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggctaagctcaccacaccaatgaaagcctccacaatggcttctcaaaaagctcctgga
tcatcctctacagcaaaaaagaaacaacaatctacattaatgtcattcttcaaacccatg
gctgctaaatccacacaaagctgtagttcaatgcaacctcaatcagtggaagagccaacg
caatctaacaaaacaaaatctaatttagcatcgtctccgttgaactctaaatcagcattt
atcaaaccagacttgtcgagtgataaggaaagtgacaaagaaaacgatgaaattatggat
aataccatgcatggctatgagagttcatattcatctcacacaacatcgcctcttgatttc
caccagcaggtaaaacggagttttaatgcatcaaagctgaagcaagacacctctacaaaa
actcccttgaaagagcgcagcactgtaatgaactcaagcccagtagctaaccgaagattg
ggtaaaaaagtaaattatgcagagtcggatattgatgatgatgatgatgatgaagaagtt
gttactagaggcaaaaggagaaaaattatgagcgatgtttcagatagtgacgaggaggat
gaatttaaaccagatgacaatgacgatgacgctgatgatgatgaagattttaatgttgat
gacaacgcaatggatgactttattgacgatgacgagcatgagccttctgacgatgaagat
ttagtcagagacaaagaaaagggcaatgtgaaaagatcacgtaaggggcaccagcagcaa
ctgaacaagtcgagaaaacaacagcaacaacaacagcaacaacaacaacaacaacaagaa
gaagaagaaaaactcagagatccaattaaacctacaaacgccgcacatatcactggtgta
tcttcaaaaagtctgtttatggaaaagtttaatgctacttcattgtacagtgcagaggat
tacaagcctcagcaataccaatcaattacatcagcaacaacaaacgctactgctacaaag
aagaattttgcaaaagaaaacgaggaaaggtaccaatggttggttaatatcaaagatgcg
caaaagagaacacctgatcatcctgagtacgatccaagaacattatacatcccacagctg
gcatggtccaaattcaccgcttttgagaaacagtattgggagatcaagtctcagatgtgg
aatactgtagtgtttttcaaaaaaggaaaattttacgagttgtacgagaatgatgctata
attgccaatacaaaattcgatttaaagattgctggtggtggaagagccaatatgaagcta
gctggtataccagaaatgtcttttgaacattgggctaaggaatttattagccatgggtat
aaagttgccaaagtagatcaaaaggaatctatgttggcaaaggagataagaggaggagcc
ccaggtgcaactaaagaggagaaaattatcaaaagagaattgaccggaatcttgacaggc
gggaccttgacggacttggatatgatttctgatgatatgtccacatactgtctcagtata
aaggaagagcaaatggaagatggcaaaggtaaaaagtttggagttgcatttgtcgatacc
tcaacttctgaattgagtcttattgagcttgaagatgataccgaatgtacaaaattggac
actttggttactcagatcaagccaaaagaaatcatatgtgaaaaagggaatctttgttcg
attgccactaaaattttgaaattttgtgctcattctaagcaccaaatttggaaccacatg
aacccaataacagagttctgggacgttgatattacccttgagcaacttgttaaatcgaga
tattttgaagctgagaatttagatgatttttcaaaatatccagacgttttagtcaaattc
aaagaaaaccacgatgttgcttttaacgcatttggaggactcttgtcctatttgaaaact
ttgaaactcgatcaaagcattatgagtcttggcaatatcaaggagtacaaaatttcattg
aatgccaattcgcacatgattctcgatggtattacgttgaacaatttggaaattttgcac
aacaattacgatggcggtgaccagggaactcttttcaaattattgaatcaagccactact
ccatttggtaagaggcaattgaaaaaatgggtattacatccattgatcaaaagcgaggat
atcaatgctaggtttgactcagtagaatacttgatgggcgacggtctcgaattaagatca
attttgcaagacacattggccaatttacctgatttagagaggttaattgctagaatacac
tcgggaacattgcgattcaaggaatttcttcgagttattgaaagtttcgaaaaaattgca
aaagtgctgtcacaactactggagttcacaaatgtcgagtgcggagtgttgcacaagtac
ttgcgaaactttccacaagccatgagctcacacattggtgaatgggacgatgcctttgat
agagtagaggcaaaacaaaacatcattgtaccagcagcaggtattgatgaagagtttgat
agttctatttccatcatcaacgacttggaagcacaattaaaccagcaacttaaggagtat
aaacgtgaatataggtcgcaagagatatgctatcgtgattcaggtaaagaggtttatctc
attgagatgcccgttaaggtggcgaagaacgtgccactgtcatggcaaacaatgggtgct
acgtctaaagtgaaacggttttggtctccaaaagttaaacaaatggctcgtaaattaatg
gaacaaagggaattacacaagtctgtatgtgatactttgaaacaaaggatgtacaacaaa
ttcgataagcattaccaaacctggatgaaagtgatcacgtgcatggctaatattgattgc
atagttgcattaacaaaagtttccgaaaccatggggttcccatcctgtcgtcccgaattt
gtagagactcagcatggtatgattgattttaaggaattgaggcatccatgctttgttggc
accaaagatttcataccaaacgacatcaagcttggtggtgatgatgaacctagttttggg
ttgctcacgggggccaatgctgctggtaagtccaccataatgagaactacggctcttgca
gttatcctaagccaaataggttgtttcatccctgcagagctggcaaaattggcccccgtg
gaccgaattatgacgcgattgggtgccaacgataatattatgcagggaaagtcgacattc
tttgtcgaattatctgaaaccaaaaagatcttgagcaatgccacacctagatcattggtg
attttagatgagttaggtagaggcggttccagctctgatgggttcgcagtggcagagtca
gttttgcatcatttggcaacgcatttgcaatctattggttttttcgctactcatttcaat
agtttagggttggcatttgaaacacacccacaggtcaagcccatgaggatggctataatt
gtagaccaaacgtcacgagaacttacatttttgtacaaattggaaagcggaacagcgcca
ggatcatttggtatgaatgttgcattaatgtgtggaatctcaaaggagattgtcgataac
gctgaagtggccgcaagagagtacgaaaagttttcaaagttaaaaagggccaaggaaaat
aaacaagaaaatgaatgcggagaagaagcagaagcagaagcagaagcagaagcagaagca
gaagcagaagcagaagcggtagcggtagccaaagccacagagattagccttggtttgcaa
agtgactgcatctggtacggagataatagagtccaggaattggaaagggatatccttgta
tacgatgagactgttaagtcgcgtgcactattcaatatctacaaaatgatagatgcattg
tag
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