Lodderomyces elongisporus: PVL30_000368
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Entry
PVL30_000368 CDS
T01116
Symbol
NOT5
Name
(RefSeq) general negative regulator of transcription subunit 5
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_000368 (NOT5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_000368 (NOT5)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_000368 (NOT5)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PVL30_000368 (NOT5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
5235740
NCBI-ProteinID:
XP_001527856
UniProt:
A5DSP0
LinkDB
All DBs
Position
1:complement(1026601..1028802)
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AA seq
733 aa
AA seq
DB search
MSARKLQHEFDRLNKKIAEGLAAFEEIKGKIQTCEVPSQREKLENDLKKELKKLQRCRDQ
LKLWLGDNGIKLDKNLLQDNRSKIEQAMDDFKEVERNSKIKQFSNEGLEMQKETQKQSRF
GDVAKVQEACDYISDIIQQLNNQNDELDRELESLSQQMKKKGGHSSTTSATIEDIKYKID
RNNTHIDKLEGVLEDLENDRLDPAKIDDVKDDLDYYVEMNQDDDYVEYDEFYDQLEVADD
DDENDIEIEGSLAQMATETIEEEERKRLELQQLGTQQSEATRATHSAASQTAGTTTGASA
SASASASSASSHPHHSHHPSSHSGKSLSVSNEPHLQGHVSSSSGGLHNTANVSAAPVKKL
RHQTSNVALAPAPPPPITSGNSYSNVIKAAQAAQLNNNNNNNNNNNNINTTTTSSSNNNG
SSSGINAANVISGGGNTTSHTSTPIVNNNVPLATALAKSVNNNNNTNVATPGKAQPPPGL
AHIASANNVINNIARSQSSSPLPSQIKLHNLNDGELLRKKVSNASQSSTATNNTTGSATN
GDGTVYFGDSINQFTNVANSRLQDPLPFQSISNLLESSLLNCPDSFDAEKPRQYTPKTVH
PSSIDYPQEPMYELNSVHYMQKFDDDLLFCCFYYGEDGCMDNFAKWNAAKELTKRGWVFN
EELSQWCLKSTGKTTGKIGRSRSSSIAPTALAGGNSASDQSLTENNGGGEKEMYTKYFDE
KTWLIRNYNYQKV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaggaagttacagcacgagttcgataggctaaacaagaagattgcggaaggg
ttagctgcgtttgaagaaatcaagggcaagattcaaacttgcgaagtgccaagtcaacgc
gagaaactcgaaaatgatctcaagaaagaattaaagaagttgcaaaggtgcagggatcaa
ttaaagttatggcttggtgataatggtattaagctagataaaaatttgttacaggataat
cggtccaagattgaacaagcgatggatgacttcaaggaagttgaacgaaattccaagatt
aagcaattctcaaacgaagggttggaaatgcaaaaagaaacacagaagcagtcgagattt
ggagatgtggccaaggttcaagaagcgtgtgattatatatctgatattatccaacagttg
aacaaccagaacgatgagttggatcgagaattggagagtttatcacaacaaatgaagaag
aaaggtggtcactcttcgacaaccctggcaactattgaagatattaagtataaaattgat
cgaaataatactcatatcgacaagttggaaggtgtattggaagatttagagaatgacaga
ttggacccagcaaaaattgatgatgttaaggatgacttggattattatgttgagatgaac
caggatgatgattatgttgagtatgatgaattctacgatcagttggaagttgctgacgat
gacgatgaaaatgacattgaaatagaaggaagtttagcacaaatggctactgagacgatt
gaagaagaagaaagaaagaggttggagttgcaacaattaggaactcaacagtcggaagct
acaagggcaacccactctgctgcgtctcagaccgcaggtactacaacgggtgcatcagct
tctgcatctgcatctgcatcctccgcgctgtcgcatcctcaccattctcatcacccatcc
tcccatagtggaaaatctttatctgtgtctaatgagccacatttgcagggacatgtatca
tcaagcagtggtggattgcacaatactgccaatgtttctgcggcgccagtgaagaaattg
aggcatcaaacatcaaatgtcgctcttgcaccggcaccaccacctccaattactagtggt
aattcgtactctaatgttataaaagctgcacaggctgctcagttaaacaacaacaacaac
aacaacaacaataataataatattaatactactactactagtagtagtaacaacaatggc
agcagcagcggcatcaatgctgcaaacgtcattagtggcggaggaaacactacaagtcac
actagtacacctattgtcaataataatgtaccgctcgcaacagccttggcaaaaagtgtt
aacaataacaacaataccaacgttgcaaccccgggcaaggcgcaacctcctcccgggtta
gcgcatattgcttctgctaataacgtcatcaataatattgctagatctcagtcgtcgtca
ccgcttccgagtcaaattaaacttcataatcttaatgatggcgagttgttgcgaaaaaaa
gtgtctaatgcatctcagctgtctactgcaaccaataataccactggtagtgcaacaaat
ggtgatggcactgtgtattttggcgactctattaatcagttcaccaatgttgccaatagc
cgattacaggatccgttaccgttccagtcgattagcaatcttttggagtcgtccttgttg
aattgtccggattcttttgatgcagagaagccgagacaatatacaccaaagactgtgcac
ccttcactgattgattatccacaggagcccatgtatgagttgaatagtgttcactatatg
caaaaatttgatgatgacttgttattctgttgtttttactatggcgaggatggatgcatg
gacaattttgccaagtggaatgctgccaaagagttgactaagagaggctgggtattcaac
gaggagttgagtcaatggtgtcttaaaagtactggtaagacaactggtaaaataggcaga
tctagatcatcctctatagcacctactgcgcttgcaggtggcaatagtgcatctgatcag
tctttaacagagaacaatggcggaggtgagaaggagatgtatacaaagtattttgatgaa
aagacttggttgattagaaattataattaccagaaagtatga
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