Lodderomyces elongisporus: PVL30_000879
Help
Entry
PVL30_000879 CDS
T01116
Symbol
PRP28
Name
(RefSeq) mRNA splicing protein prp28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVL30_000879 (PRP28)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lel03041
]
PVL30_000879 (PRP28)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVL30_000879 (PRP28)
Spliceosome [BR:
lel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PVL30_000879 (PRP28)
Complex C
U5 SnRNP specific factors
PVL30_000879 (PRP28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
5235302
NCBI-ProteinID:
XP_001528389
UniProt:
A5DU73
LinkDB
All DBs
Position
1:2456668..2458461
Genome browser
AA seq
597 aa
AA seq
DB search
MSKRPIPIDDLLKEDAIVPKYIPKSKRAKSSNGPGEDGANTTLKSQYPQSSVNHGSAVSR
STQFSAHQKSSTRPTTSLQPPSKSRHKKFQFDWDDIDDPHYNPQPLYSFELDQLGVENGD
NYNDNKNNNDDDDNFDFQDPLLHDDRNSGHWSTKLLSEMTDRDWRIFNEDYGITTKGKKI
PHATRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLESRDVVGVAETGSGKTLAFL
LPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGG
RQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFE
KDLNKLINLLPKNEKLSTTIDGKLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIG
GAGEALDNIDQHFDYLSTYAESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLE
LEQNNLSNVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSLVINYQMSK
KFDEYIHRIGRTGRAGNLGESYTFLDDADAETFMPLKKFLKSGRKKVPEWLYRYNIG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagaccaatacccattgatgatcttcttaaagaggatgcaatcgttcccaaa
tacattccaaaatcgaaaagagcaaagtcaagcaatggccctggtgaagatggtgcaaat
accactcttaaactgcaatatcctcaaagttcagtgaatcacggtagtgctgtttcaaga
tcaacacaattctccgcacatcagaagtcttcaactcgtcctactacatctttgcaacca
ccatcaaaactgcgacacaagaagtttcaatttgactgggatgatattgatgatccacac
tataacccccaacctttatactcatttgagcttgatcaactaggtgttgaaaatggtgat
aactacaatgataacaagaacaacaacgacgacgacgacaacttcgactttcaagatcct
ttgctccatgatgatcgtaatagtgggcattggtccactaaattattatccgaaatgact
gatcgtgattggcgaatattcaacgaagattatggcattacaacaaaaggtaagaagatt
ccgcatgctactcgctcgtgggatgaaagtggattggatcccaagattctcgcatcctta
aagagctttggatttcgtcaacctacaccagtacaaagggctagtattccaattagtctt
gagctgcgagatgttgttggtgttgccgaaacaggtagtggtaagacgttggctttttta
cttccattgcttcattatttaagtcgcgtggatgggaattatttgaattatgaaaaagtg
cgaaatgaaccattggcattggtacttgcgccaactagagaattggctttacagattacg
caagaagcagagaagtttggcaaacaattgggtttcaatgttttgtccatcattggaggt
cgccagtatcaagaaacaatggatcaaattgataatatgatagtaggaagaggcgtgcat
atagttgttggtactcccggaaggttactcgattcagttgagcgcaagattctaaatttc
agcaaatgctactatttggtgatggatgaggcagatagaatgattgatatgggatttgaa
aaggacttgaacaagttgattaatttgctaccaaagaatgagaagttatcgactacaatt
gatggtaaattattccacttgactaagagattaaccatgatgtatactgcaaccatttca
cctccaattgaaaagattacaaagtcgtacctaattgatccagcatacatctatattgga
ggcgctggcgaggcattggacaatattgatcaacatttcgactatctttcgacatatgcg
gaaagtgcaagattgagcaaattaattaaagttgtgcaaggccacaagaggagaaataga
aacgctctcgttatcatctttgctaacttcaaacatgtttgtgacgttttgtcattggaa
ttggagcagaataacttgctgaatgtagttattcatggctccaaatctcaagaagcacga
gaagaagcattagaagattttaggacccaccaagcaccaatattagttgcaaccgatgtt
gcggcaagaggcatagatgttcccaatgtgagtcttgttatcaattaccaaatgagcaaa
aaatttgacgaatatatacacaggatcggaagaactggtagagcagggaacttgggtgaa
agttacacctttttggatgatgcagatgctgagacatttatgccattaaagaagttttta
aaaagtggtcggaaaaaagtacccgaatggttgtacagatacaatattggttga
DBGET
integrated database retrieval system
